# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2b0vA 153 3.318 d.113.1.1 127650 2yrvA 117 6.411 2dyqA 144 8.461 2qqrA 118 9.934 2hqxA 246 11.11 b.34.9.1 136675 1am2A 199 12.58 b.86.1.2 28381 2dkoB 103 12.94 2j01E 206 13.61 1llaA 628 13.74 a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1em2A 229 14.71 d.129.3.2 41321 1l5wA 796 18.29 c.87.1.4 73605 1gvhA 396 20.73 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1sc3B 88 22.41 3bjeA 349 22.59 2oatA 439 22.90 c.67.1.4 34452 3bn1A 373 23.24 1ryaA 160 26.62 d.113.1.5 105122 1krhA 338 27.06 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1twfB 1224 28.14 e.29.1.1 112726 1pyoB 105 28.15 1kjwA 295 28.49 b.34.2.1,c.37.1.1 68643,68644 1q5yA 85 28.58 d.58.18.4 95950 1q0uA 219 29.44 c.37.1.19 95512 2hxwA 237 30.53 2asuB 234 30.67 1kzlA 208 30.92 b.43.4.3,b.43.4.3 77635,77636 1accA 735 31.39 f.11.1.1 43828 1cfbA 205 32.46 b.1.2.1,b.1.2.1 21991,21992 2e5yA 133 32.88 1s96A 219 34.08 c.37.1.1 98740 1qqp2 218 37.87 1nmeB 92 38.13 1i8dA 213 38.46 b.43.4.3,b.43.4.3 61953,61954 2opkA 112 39.75 1qtnB 95 40.25 1vqoB 338 40.43 b.43.3.2 120363 2gfaA 119 40.52 b.34.9.1,b.34.9.1 135089,135090 1fd9A 213 41.44 d.26.1.1 59771 1v0aA 178 42.29 b.18.1.30 119815 2arhA 203 42.36 d.108.1.9 127197 1ok0A 74 43.56 b.5.1.1 93191 3borA 237 43.69 2bjrA 368 46.12 b.169.1.1,b.169.1.1 128628,128629 1gwmA 153 47.33 b.18.1.19 83348 1zxfA 155 48.58 d.129.3.5 125771 1wguA 136 50.71 b.55.1.2 114623 1sc3A 178 55.13 c.17.1.1 105416 1v2xA 194 55.53 c.116.1.1 100274 2ojwA 384 55.77 1jmmA 377 60.45 b.30.6.1 71749 2z2iA 191 60.51 1xjvA 294 62.88 b.40.4.3,b.40.4.3 115396,115397 1q3lA 69 64.08 b.34.13.2 111652 1vqoA 240 64.91 b.34.5.3,b.40.4.5 120361,120362 1uz5A 402 66.85 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 3d1cA 369 68.06 2gxqA 207 69.53 2j5aA 110 70.22 2f3nA 76 70.40 a.60.1.2 132885 1c4kA 730 71.79 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1ynfA 458 72.96 d.126.1.7 123723 2gmsA 390 73.45 1pfbA 55 73.52 b.34.13.2 94655 2r98A 456 74.09 1xcbA 211 75.17 a.4.5.38,c.2.1.12 109552,109553 2cb5A 453 75.65 d.3.1.1 37035 1w30A 201 77.54 c.61.1.1 114118 2q1mA 130 77.79 1fs0E 138 78.95 a.2.10.1,b.93.1.1 59997,59998 1qxyA 252 79.17 d.127.1.1 96565 2r55A 231 80.10 1vmaA 306 81.41 a.24.13.1,c.37.1.10 108887,108888 1uscA 178 83.11 b.45.1.2 99860 1g0sA 209 84.39 d.113.1.1 60187 2pthA 193 84.42 c.56.3.1 33793 2r6hA 290 86.36 2am1A 454 86.70 2f9cA 334 87.58 b.81.1.7 133158 1gx3A 284 89.17 d.3.1.5 70678 1m7xA 617 89.25 b.1.18.2,b.71.1.1,c.1.8.1 78749,78750,78751 1qwdA 177 89.43 b.60.1.1 96471 1vqoQ 96 89.60 b.34.5.1 120378