# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1r6vA 671 0.02911 c.41.1.1 111710 1suuA 312 0.9949 b.68.10.1 99006 1goiA 499 1.106 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1ksiA 642 1.187 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 2aaaA 484 1.203 b.71.1.1,c.1.8.1 27777,28764 2d1wA 638 1.426 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 2biwA 490 2.533 1hx0A 496 2.583 b.71.1.1,c.1.8.1 61346,61347 1ni5A 433 3.038 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1am2A 199 3.085 b.86.1.2 28381 1ynfA 458 4.443 d.126.1.7 123723 2as0A 396 7.075 b.122.1.9,c.66.1.51 127227,127228 2eabA 899 7.251 2hqxA 246 8.699 b.34.9.1 136675 1hzoA 271 9.630 e.3.1.1 71092 1mi8A 158 9.705 b.86.1.2 91279 1d4aA 273 11.61 c.23.5.3 31219 2b0vA 153 11.69 d.113.1.1 127650 1xf1A 926 14.33 1vnsA 609 15.35 a.111.1.3 19061 2eceA 462 16.81 1ep3B 262 17.29 b.43.4.2,c.25.1.3 25664,31554 3biqA 467 18.41 1i0dA 332 18.67 c.1.9.3 61487 2psoA 237 18.82 1ecfA 504 20.38 c.61.1.1,d.153.1.1 34053,41820 2yrvA 117 20.44 2sliA 679 21.75 b.29.1.9,b.68.1.1 24274,27611 1w6gA 646 22.07 b.30.2.1,d.17.2.1,d.17.2.1 120660,120661,120662 1uasA 362 23.36 b.71.1.1,c.1.8.1 88388,88389 2qv3A 457 23.51 1pc3A 350 23.62 c.94.1.1 104102 1em2A 229 24.53 d.129.3.2 41321 2cn3A 737 24.76 1lnsA 763 25.59 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1s96A 219 25.91 c.37.1.1 98740 1v2xA 194 28.17 c.116.1.1 100274 1ra0A 430 28.26 b.92.1.2,c.1.9.5 111756,111757 1yifA 533 28.84 b.29.1.23,b.67.2.1 123283,123284 3d1cA 369 28.92 2qqrA 118 29.25 3c0bA 334 29.63 2dyqA 144 32.36 1iyeA 309 32.43 e.17.1.1 83786 1jndA 420 32.75 c.1.8.5,d.26.3.1 71757,71758 1qtnB 95 34.24 2yw2A 424 34.37 1vf8A 377 35.74 c.1.8.5,d.26.3.1 120029,120030 2e27H 126 36.51 2vr4A 846 37.22 1nmsA 249 38.45 c.17.1.1 85879 1bg1A 722 38.90 a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 2icyA 469 41.11 b.81.1.4,c.68.1.5 137257,137258 1ez0A 510 41.26 c.82.1.1 35385 1yljA 263 41.58 2j01E 206 43.46 1se8A 301 43.79 b.40.4.3 105448 1i8dA 213 44.60 b.43.4.3,b.43.4.3 61953,61954 3cddA 361 44.89 1aohA 147 46.15 b.2.2.2 22401 2vovA 336 46.34 1ryaA 160 46.41 d.113.1.5 105122 2ghpA 292 50.06 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 2yziA 138 52.88 2fq6A 415 54.16 c.67.1.3 133939 2gdnA 267 54.16 1nkgA 508 55.48 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1kjwA 295 57.10 b.34.2.1,c.37.1.1 68643,68644 1sc3A 178 57.71 c.17.1.1 105416 3bc9A 599 58.85 1wl7A 312 59.44 b.67.2.1 120996 2oatA 439 61.94 c.67.1.4 34452 1f42A 306 63.50 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 2ej8A 160 63.56 1cbfA 285 63.65 c.90.1.1 35587 1k5nB 100 63.89 b.1.1.2 77268 1wkyA 464 65.14 b.18.1.31,c.1.8.3 120992,120993 1vmaA 306 65.32 a.24.13.1,c.37.1.10 108887,108888 1q5yA 85 66.18 d.58.18.4 95950 2gfaA 119 66.89 b.34.9.1,b.34.9.1 135089,135090 2cb5A 453 67.38 d.3.1.1 37035 1juhA 350 67.44 b.82.1.5 71884 2ho3A 325 70.10 1n6aA 259 70.78 b.76.2.1,b.85.7.1 80121,80122 1wb0A 445 71.02 c.1.8.5,d.26.3.1 120825,120826 2qpwA 149 74.94 2odpA 509 75.16 1w9pA 433 76.95 c.1.8.5,d.26.3.1 114412,114413 2bivA 243 77.32 b.34.9.3,b.34.9.3 128592,128593 1jvbA 347 77.53 b.35.1.2,c.2.1.1 77181,77182 1pjrA 724 78.73 c.37.1.19,c.37.1.19 32391,32392 2ieaA 886 78.98 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 3cc1A 433 79.71 2hxwA 237 80.16 2gl6A 392 80.62 2r98A 456 81.48 1zxfA 155 81.69 d.129.3.5 125771 2bdvA 231 82.74 d.303.1.1 128345 1qqp2 218 84.29 1pg4A 652 84.32 e.23.1.1 88067 2jmzA 186 84.88 1atiA 505 85.54 c.51.1.1,d.104.1.1 33196,40745 2rerA 173 85.65 2nvwA 479 86.47 c.2.1.3,d.81.1.5 138665,138666 2jixB 225 87.05 2an9A 207 87.55 c.37.1.1 127037 1d2eA 397 87.58 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 8abp 306 87.68 1sc3B 88 87.99 1mkaA 171 89.39 d.38.1.2 38543