# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1llaA	628	4.933	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
2b0vA	153	5.692	d.113.1.1	127650
2hqxA	246	6.381	b.34.9.1	136675
2yrvA	117	7.229		
2dyqA	144	9.904		
1em2A	229	10.59	d.129.3.2	41321
1am2A	199	10.99	b.86.1.2	28381
1q5yA	85	11.93	d.58.18.4	95950
2dkoB	103	14.50		
2qqrA	118	14.69		
1v2xA	194	14.79	c.116.1.1	100274
2j01E	206	15.44		
1kjwA	295	17.99	b.34.2.1,c.37.1.1	68643,68644
1ryaA	160	21.17	d.113.1.5	105122
1s96A	219	22.04	c.37.1.1	98740
1zxfA	155	23.55	d.129.3.5	125771
3bjeA	349	27.24		
1sc3B	88	27.79		
1qqp2	218	28.75		
1l5wA	796	30.72	c.87.1.4	73605
2hxwA	237	31.08		
1sc3A	178	33.07	c.17.1.1	105416
1pyoB	105	33.11		
1gvhA	396	35.71	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1cfbA	205	35.83	b.1.2.1,b.1.2.1	21991,21992
2gfaA	119	37.23	b.34.9.1,b.34.9.1	135089,135090
2ojwA	384	37.75		
1nmeB	92	39.77		
3bn1A	373	40.43		
1accA	735	41.01	f.11.1.1	43828
1qtnB	95	46.08		
1fd9A	213	46.62	d.26.1.1	59771
1w30A	201	47.12	c.61.1.1	114118
1vqoB	338	49.57	b.43.3.2	120363
1jmmA	377	50.04	b.30.6.1	71749
1i8dA	213	51.22	b.43.4.3,b.43.4.3	61953,61954
1vmaA	306	53.03	a.24.13.1,c.37.1.10	108887,108888
1gwmA	153	53.12	b.18.1.19	83348
1cbfA	285	53.14	c.90.1.1	35587
1kzlA	208	55.04	b.43.4.3,b.43.4.3	77635,77636
2bjrA	368	56.84	b.169.1.1,b.169.1.1	128628,128629
1ni5A	433	57.07	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
2asuB	234	57.73		
2ca9A	148	58.60		
1wguA	136	58.88	b.55.1.2	114623
3d1cA	369	60.46		
2vsmA	416	63.47		
2r55A	231	64.20		
1xcbA	211	65.14	a.4.5.38,c.2.1.12	109552,109553
2e5yA	133	65.41		
2f5vA	595	66.08	c.3.1.2,d.16.1.1	133010,133011
1v0aA	178	67.95	b.18.1.30	119815
2f3nA	76	68.99	a.60.1.2	132885
1ok0A	74	69.49	b.5.1.1	93191
1cjcA	460	69.73	c.3.1.1,c.4.1.1	30319,30604
1q0uA	219	72.88	c.37.1.19	95512
1xu1R	42	77.40	g.24.1.2	116036
2csgA	424	77.71	b.82.2.12	130768
1nmsA	249	78.00	c.17.1.1	85879
1q3lA	69	79.88	b.34.13.2	111652
2gt1A	326	81.71		
2arhA	203	82.92	d.108.1.9	127197
2oatA	439	83.38	c.67.1.4	34452
1krhA	338	88.24	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1u8xX	472	88.51	c.2.1.5,d.162.1.2	107741,107742