# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yrvA	117	6.365		
2b0vA	153	7.147	d.113.1.1	127650
2dyqA	144	12.03		
1llaA	628	12.88	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
2hqxA	246	15.11	b.34.9.1	136675
1em2A	229	15.46	d.129.3.2	41321
2qqrA	118	16.18		
2dkoB	103	18.10		
1zxfA	155	22.24	d.129.3.5	125771
1dk8A	147	24.04	a.91.1.1	18548
3bjeA	349	24.13		
1am2A	199	24.20	b.86.1.2	28381
1fd9A	213	24.24	d.26.1.1	59771
1sc3B	88	25.55		
2j01E	206	26.95		
1v0aA	178	27.17	b.18.1.30	119815
1q5yA	85	27.27	d.58.18.4	95950
1ryaA	160	32.46	d.113.1.5	105122
1v2xA	194	38.48	c.116.1.1	100274
3borA	237	38.64		
1pyoB	105	39.77		
1wguA	136	40.52	b.55.1.2	114623
1xcbA	211	42.20	a.4.5.38,c.2.1.12	109552,109553
1q0uA	219	42.20	c.37.1.19	95512
1cfbA	205	42.77	b.1.2.1,b.1.2.1	21991,21992
1qtnB	95	43.87		
1jmmA	377	43.94	b.30.6.1	71749
2cy7A	396	45.58		
1kzlA	208	49.64	b.43.4.3,b.43.4.3	77635,77636
2gfaA	119	51.15	b.34.9.1,b.34.9.1	135089,135090
1nmeB	92	52.90		
1s96A	219	53.73	c.37.1.1	98740
3d1cA	369	54.49		
1i8dA	213	58.29	b.43.4.3,b.43.4.3	61953,61954
1gwmA	153	58.39	b.18.1.19	83348
2ojwA	384	62.21		
2cb5A	453	63.90	d.3.1.1	37035
1ni5A	433	64.99	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
3bn1A	373	65.46		
2asuB	234	65.51		
1ok0A	74	66.18	b.5.1.1	93191
1m7xA	617	66.74	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
2gxqA	207	67.72		
1vqoB	338	68.28	b.43.3.2	120363
1q46A	175	70.37	a.60.14.1,b.40.4.5	111594,111595
1ybyA	215	72.21		
1l5wA	796	76.99	c.87.1.4	73605
2bjrA	368	77.65	b.169.1.1,b.169.1.1	128628,128629
1twfB	1224	79.30	e.29.1.1	112726
3cihA	739	85.85		
1uz5A	402	88.78	b.85.6.1,b.103.1.1,c.57.1.2	100217,100218,100219
1sc3A	178	88.85	c.17.1.1	105416