# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1llaA	628	4.973	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
2dkoB	103	6.540		
2yrvA	117	6.777		
1sc3B	88	8.476		
2b0vA	153	9.945	d.113.1.1	127650
1qtnB	95	11.51		
1pyoB	105	12.95		
1nmeB	92	16.95		
2dyqA	144	17.00		
2qqrA	118	17.06		
3borA	237	19.39		
1am2A	199	19.61	b.86.1.2	28381
1q0uA	219	21.07	c.37.1.19	95512
1em2A	229	21.53	d.129.3.2	41321
2hqxA	246	22.16	b.34.9.1	136675
1ryaA	160	22.51	d.113.1.5	105122
2ojwA	384	22.78		
1zxfA	155	25.40	d.129.3.5	125771
1gvhA	396	26.17	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2cy7A	396	28.70		
1kzlA	208	30.66	b.43.4.3,b.43.4.3	77635,77636
2gxqA	207	31.73		
1s96A	219	32.18	c.37.1.1	98740
3bjeA	349	32.68		
2j01E	206	34.11		
1cfbA	205	35.10	b.1.2.1,b.1.2.1	21991,21992
1e5eA	404	35.88	c.67.1.3	59265
2gfaA	119	40.11	b.34.9.1,b.34.9.1	135089,135090
1ok0A	74	41.09	b.5.1.1	93191
2f3nA	76	41.55	a.60.1.2	132885
1dk8A	147	41.78	a.91.1.1	18548
1kjwA	295	43.16	b.34.2.1,c.37.1.1	68643,68644
2uw1A	338	44.71		
2cb5A	453	45.19	d.3.1.1	37035
1i8dA	213	46.23	b.43.4.3,b.43.4.3	61953,61954
1fd9A	213	46.94	d.26.1.1	59771
2a74B	188	47.72		
3bn1A	373	48.79		
1gwmA	153	50.22	b.18.1.19	83348
2psoA	237	50.89		
2hxwA	237	55.04		
2asuB	234	55.74		
1uscA	178	56.65	b.45.1.2	99860
2bjrA	368	57.26	b.169.1.1,b.169.1.1	128628,128629
2opkA	112	59.47		
1v2xA	194	60.86	c.116.1.1	100274
1v0aA	178	61.94	b.18.1.30	119815
1vqoB	338	65.32	b.43.3.2	120363
1uz5A	402	66.35	b.85.6.1,b.103.1.1,c.57.1.2	100217,100218,100219
2r55A	231	69.20		
2arhA	203	70.76	d.108.1.9	127197
1w30A	201	72.59	c.61.1.1	114118
2d9gA	53	73.04		
1vqoA	240	73.91	b.34.5.3,b.40.4.5	120361,120362
2j5aA	110	73.96		
1l5wA	796	74.15	c.87.1.4	73605
1jmmA	377	74.39	b.30.6.1	71749
1nmsA	249	76.11	c.17.1.1	85879
1lnsA	763	76.74	a.40.2.1,b.18.1.13,c.69.1.21	78101,78102,78103
1n6aA	259	78.15	b.76.2.1,b.85.7.1	80121,80122
1q5yA	85	82.88	d.58.18.4	95950
2fp3A	316	84.76		
1nycA	111	85.45	b.61.2.2	92336
3cihA	739	87.86