# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1llaA	628	6.004	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
2yrvA	117	6.831		
1em2A	229	9.218	d.129.3.2	41321
2dkoB	103	12.83		
2hqxA	246	12.89	b.34.9.1	136675
2qqrA	118	13.53		
1am2A	199	13.55	b.86.1.2	28381
2dyqA	144	13.56		
1v0aA	178	13.97	b.18.1.30	119815
1zxfA	155	14.31	d.129.3.5	125771
1kzlA	208	18.20	b.43.4.3,b.43.4.3	77635,77636
1i8dA	213	18.29	b.43.4.3,b.43.4.3	61953,61954
1fd9A	213	18.48	d.26.1.1	59771
2j01E	206	18.88		
1sc3B	88	20.52		
1q0uA	219	21.26	c.37.1.19	95512
1qtnB	95	22.06		
2b0vA	153	22.32	d.113.1.1	127650
1s96A	219	24.42	c.37.1.1	98740
1gwmA	153	24.80	b.18.1.19	83348
1vqoB	338	25.00	b.43.3.2	120363
1cfbA	205	25.84	b.1.2.1,b.1.2.1	21991,21992
3borA	237	27.04		
1pyoB	105	27.37		
3bjeA	349	28.80		
1nmeB	92	32.73		
2gxqA	207	33.16		
2ojwA	384	34.59		
2gfaA	119	36.10	b.34.9.1,b.34.9.1	135089,135090
1kjwA	295	36.56	b.34.2.1,c.37.1.1	68643,68644
1jmmA	377	36.76	b.30.6.1	71749
3cihA	739	39.80		
1q5yA	85	42.04	d.58.18.4	95950
2f5vA	595	43.78	c.3.1.2,d.16.1.1	133010,133011
2r55A	231	48.32		
1twfB	1224	48.37	e.29.1.1	112726
1krhA	338	48.69	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
2asuB	234	50.91		
1l5wA	796	53.36	c.87.1.4	73605
2arhA	203	57.72	d.108.1.9	127197
2cb5A	453	58.60	d.3.1.1	37035
1m7xA	617	58.62	b.1.18.2,b.71.1.1,c.1.8.1	78749,78750,78751
2a74B	188	60.03		
1ok0A	74	60.17	b.5.1.1	93191
1vqoA	240	60.73	b.34.5.3,b.40.4.5	120361,120362
1gvhA	396	61.10	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1w7cA	747	63.19		
1mhnA	59	68.43	b.34.9.1	84964
1sc3A	178	68.99	c.17.1.1	105416
2hxwA	237	71.12		
1n6aA	259	73.40	b.76.2.1,b.85.7.1	80121,80122
1fuiA	591	76.75	b.43.2.1,c.85.1.1	25674,35444
2oatA	439	77.06	c.67.1.4	34452
1uz5A	402	77.51	b.85.6.1,b.103.1.1,c.57.1.2	100217,100218,100219
1qxyA	252	77.59	d.127.1.1	96565
2bjrA	368	77.69	b.169.1.1,b.169.1.1	128628,128629
1gx3A	284	77.79	d.3.1.5	70678
2ok8A	316	77.96		
1ybyA	215	78.42		
1qqp2	218	78.80		
1lshA	1056	78.94	a.118.4.1,f.7.1.1,f.7.1.1	74242,74243,74244
1uscA	178	79.05	b.45.1.2	99860
1vqoQ	96	79.74	b.34.5.1	120378
2e5yA	133	79.84		
1ryaA	160	80.56	d.113.1.5	105122
2bkdN	134	81.87		
2c71A	216	82.04	c.6.2.3	130017
1w4sA	174	84.02		
1nycA	111	85.45	b.61.2.2	92336
1v2xA	194	86.10	c.116.1.1	100274
1xu1R	42	86.11	g.24.1.2	116036
2pnlA	203	87.20		
2r6hA	290	88.59