# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1dk8A	147	1.368	a.91.1.1	18548
2dkoB	103	1.451		
2yrvA	117	1.913		
1sc3A	178	3.718	c.17.1.1	105416
1pyoB	105	4.842		
1kjwA	295	6.462	b.34.2.1,c.37.1.1	68643,68644
2hqxA	246	10.67	b.34.9.1	136675
1q46A	175	12.87	a.60.14.1,b.40.4.5	111594,111595
1wguA	136	12.88	b.55.1.2	114623
1nmeB	92	14.22		
1qtnB	95	14.67		
2a19A	175	15.49		
2bkdN	134	15.55		
2asuB	234	16.75		
1sc3B	88	18.35		
1vqoQ	96	25.64	b.34.5.1	120378
1nnvA	110	26.94	d.17.7.1	92012
2dyqA	144	28.45		
2fl7A	232	29.32		
2oj5A	165	32.40		
2qpwA	149	33.72		
1wf3A	301	41.47	c.37.1.8,d.52.3.1	114574,114575
1ia9A	280	44.45	d.144.1.5	62113
1vmaA	306	45.69	a.24.13.1,c.37.1.10	108887,108888
1am2A	199	47.18	b.86.1.2	28381
1oyzA	280	48.67	a.118.1.16	93775
2b0aA	186	50.78	c.8.8.1	127632
2glfA	450	51.55		
1nmsA	249	51.59	c.17.1.1	85879
1zkkA	167	55.95		
1xkzA	255	57.51	e.3.1.1	115426
1em2A	229	58.17	d.129.3.2	41321
1d3bA	75	64.23	b.38.1.1	24798
2hxwA	237	68.18		
2p0pA	126	69.70		
2r55A	231	74.52		
2rerA	173	74.99		
2r78A	117	75.33		
1ok0A	74	76.35	b.5.1.1	93191
1j1nA	492	77.79	c.94.1.1	83978
2hdeA	148	77.88		
1ppjE	196	79.33	b.33.1.1,f.23.12.1	104260,104261
1n6aA	259	82.84	b.76.2.1,b.85.7.1	80121,80122