# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1kjwA	295	9.825	b.34.2.1,c.37.1.1	68643,68644
2bkdN	134	11.37		
2cy7A	396	11.75		
2yrvA	117	15.45		
2hqxA	246	16.88	b.34.9.1	136675
2dkoB	103	19.44		
1dk8A	147	20.03	a.91.1.1	18548
1nmsA	249	26.25	c.17.1.1	85879
1ok0A	74	29.27	b.5.1.1	93191
1wgsA	133	32.16	b.34.13.3	114622
2qqrA	118	33.84		
1nmeB	92	35.64		
2qpwA	149	38.01		
1am2A	199	41.42	b.86.1.2	28381
1n6aA	259	41.75	b.76.2.1,b.85.7.1	80121,80122
1pyoB	105	42.90		
2a19A	175	42.91		
2asuB	234	44.59		
2jn9A	105	44.93		
1vmaA	306	49.72	a.24.13.1,c.37.1.10	108887,108888
1b12A	248	49.87	b.87.1.2	28388
2gfaA	119	51.66	b.34.9.1,b.34.9.1	135089,135090
1sc3B	88	54.69		
2rkqA	169	59.24		
1gx3A	284	63.67	d.3.1.5	70678
2bcoA	350	68.10	c.56.5.7	128302
2p0pA	126	73.17		
1mhnA	59	73.93	b.34.9.1	84964
2j5aA	110	78.45		
1hplA	449	82.61	b.12.1.2,c.69.1.19	23639,34787
2pz4A	239	83.12		
1vqoQ	96	84.01	b.34.5.1	120378