# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ckkA 127 0.7547 2e63A 170 1.050 1kzlA 208 1.699 b.43.4.3,b.43.4.3 77635,77636 2gjgA 248 3.894 1i8dA 213 4.043 b.43.4.3,b.43.4.3 61953,61954 1h9mA 145 4.280 b.40.6.2,b.40.6.2 60833,60834 1mhnA 59 4.298 b.34.9.1 84964 2bkdN 134 4.585 2qqrA 118 5.213 2hqxA 246 7.221 b.34.9.1 136675 1wzoA 246 7.928 2f5kA 102 8.528 b.34.13.3 132995 1khcA 147 11.53 b.34.9.2 68608 2eqjA 66 11.71 1sawA 225 12.24 d.177.1.1 112050 1nkqA 259 13.41 d.177.1.1 103862 1gutA 68 13.90 b.40.6.1 65576 2gfaA 119 14.28 b.34.9.1,b.34.9.1 135089,135090 2bemA 170 18.44 b.1.18.2 116698 1oz2A 331 19.61 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 2g3rA 123 20.02 b.34.9.1,b.34.9.1 134570,134571 2bw0A 329 20.45 b.46.1.1,c.65.1.1 129303,129304 2i46A 161 21.83 2pu9B 74 23.17 2e70A 71 25.22 1bkbA 136 25.28 b.34.5.2,b.40.4.5 24609,25341 2yyoA 171 26.18 1s3iA 310 28.23 b.46.1.1,c.65.1.1 98435,98436 2e5pA 68 29.14 1mi8A 158 29.53 b.86.1.2 91279 1xyiA 66 30.51 1gnyA 153 32.79 b.18.1.11 65404 1x6oA 174 32.82 b.34.5.2,b.40.4.5 109493,109494 1jyhA 157 34.24 d.60.1.3 71956 1vqoA 240 34.75 b.34.5.3,b.40.4.5 120361,120362 1hyoA 421 35.33 b.34.8.1,d.177.1.1 59001,59002 1hqlA 257 35.62 b.29.1.1 65907 1pfbA 55 35.89 b.34.13.2 94655 2gqvA 62 35.89 b.34.4.1 135515 1at0 145 37.86 1bkb 136 38.72 2r58A 265 38.95 1vie 62 39.50 2h1eA 177 39.90 1ugpB 226 40.42 b.34.4.4 107832 1dj7B 75 40.69 b.34.4.3 24598 1fx5A 242 41.42 b.29.1.1 24135 1xw3A 110 41.52 1smxA 96 41.65 b.40.4.5 105772 1fd9A 213 41.85 d.26.1.1 59771 2pthA 193 42.68 c.56.3.1 33793 1fr3A 67 44.96 b.40.6.1 25436 2cwpA 112 45.63 1at0A 145 46.29 b.86.1.1 28374 2p0kA 212 47.96 1ukgA 252 48.20 b.29.1.1 99489 2gj2A 85 48.39 2e8gA 241 50.16 1gzcA 239 52.24 b.29.1.1 70803 2b3gA 123 52.61 b.40.4.3 127786 2z0rA 103 52.69 2pth 193 52.88 1dpbA 243 55.45 c.43.1.1 32618 2b2yA 187 56.74 b.34.13.2,b.34.13.2 127754,127755 2ii1A 301 57.00 2yueA 168 57.93 2ej8A 160 57.98 2z2iA 191 59.10 1gttA 429 59.81 d.177.1.1,d.177.1.1 70529,70530 1oa8A 133 60.12 b.145.1.1 92698 2fcoA 200 60.16 2f4eA 180 60.21 1sr9A 644 60.64 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1q6uA 245 60.72 d.26.1.1 95998 2e01A 457 61.62 2cu2A 337 63.57 1ja1A 622 63.76 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1gsa 316 66.53 2eb4A 267 66.80 1vqoQ 96 67.92 b.34.5.1 120378 1n4kA 381 68.05 a.118.22.1,b.42.6.1 79992,79993 1vjlA 164 68.59 d.257.1.1 100822 2do3A 69 70.09 b.34.5.5 131596 1jhfA 202 71.18 a.4.5.2,b.87.1.1 63057,63058 1l3aA 228 71.20 d.18.1.2 73531 1jvwA 167 71.50 d.26.1.1 71907 1xniA 118 73.38 b.34.9.1,b.34.9.1 115582,115583 1aijH 260 75.90 b.41.1.1,f.23.10.1 25466,43463 2bivA 243 75.96 b.34.9.3,b.34.9.3 128592,128593 2pcxA 220 76.89 2gqqA 163 77.14 2fmmA 74 77.27 b.34.13.2 133782 1m1sA 116 80.61 b.1.11.2 84747 1u79A 129 82.14 d.26.1.1 107714 1gsaA 316 84.02 c.30.1.3,d.142.1.1 31718,41477 1ahsA 126 84.13 b.19.1.1 23794 2hb0A 369 85.32 1jpyA 137 85.34 g.17.1.6 67065 1i7nA 309 85.72 c.30.1.5,d.142.1.3 83681,83682 2qdyB 212 87.16 1e4eA 343 87.81 c.30.1.2,d.142.1.1 59221,59222 3cgvA 397 87.98 2j5uA 255 89.49 2inwA 133 89.77 d.110.8.1 137533