# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yrvA	117	2.092		
2hqxA	246	2.588	b.34.9.1	136675
2qqrA	118	5.518		
1mhnA	59	7.938	b.34.9.1	84964
2b0vA	153	8.162	d.113.1.1	127650
2bkdN	134	11.12		
1mi8A	158	11.73	b.86.1.2	91279
1w5rA	278	11.88	d.3.1.5	120643
1z9nA	177	12.18		
2yvpA	182	16.56		
1gvhA	396	17.73	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2pz0A	252	19.53		
1vhmA	195	19.58	d.110.2.1	100691
1qwdA	177	20.11	b.60.1.1	96471
2dyqA	144	21.17		
1edgA	380	21.28	c.1.8.3	28807
2jepA	395	24.12		
2qpwA	149	27.22		
1em2A	229	28.05	d.129.3.2	41321
1wgsA	133	28.36	b.34.13.3	114622
1qtnB	95	28.64		
1avqA	228	31.29	c.52.1.13	33326
1ok0A	74	33.72	b.5.1.1	93191
2dkoB	103	34.05		
2gfaA	119	35.32	b.34.9.1,b.34.9.1	135089,135090
1hoe	74	36.95		
1zjrA	211	41.84		
1nmeB	92	42.81		
1sc3B	88	43.29		
1zc1A	208	43.98		
2f2lX	167	44.47	d.118.1.1	132844
1wfyA	104	46.69	d.15.1.5	114597
1oycA	400	48.08	c.1.4.1	28603
1c1dA	355	50.39	c.2.1.7,c.58.1.1	30270,33918
1kzlA	208	50.90	b.43.4.3,b.43.4.3	77635,77636
2r6hA	290	51.02		
1i8dA	213	51.54	b.43.4.3,b.43.4.3	61953,61954
1wznA	252	53.51	c.66.1.43	121525
2f4eA	180	53.56		
1t3lA	337	54.09	b.34.2.1,c.37.1.1	106358,106359
2arcA	164	55.25	b.82.4.1	28148
1d2oA	187	55.37	b.3.5.1,b.3.5.1	22625,22626
2pth	193	57.46		
1vp2A	208	58.83	c.51.4.1	113933
2fjrA	189	58.91		
1xf1A	926	60.45		
1a8pA	258	61.11	b.43.4.2,c.25.1.1	25654,31544
1ryaA	160	61.39	d.113.1.5	105122
2dt5A	211	63.40	a.4.5.38,c.2.1.12	131708,131709
2pthA	193	63.64	c.56.3.1	33793
2qfeA	148	64.17		
2f5kA	102	64.60	b.34.13.3	132995
1jj2B	337	65.46	b.43.3.2	63086
2qdxA	257	65.52		
1sesA	421	65.70	a.2.7.1,d.104.1.1	15710,40710
1wleA	501	69.14		
1pdqA	72	69.47	b.34.13.2	94590
1xcbA	211	71.15	a.4.5.38,c.2.1.12	109552,109553
2hd9A	145	72.46		
2ouiA	360	75.54		
2aqpA	164	76.31		
1iznB	277	83.17	e.43.1.2	83848
2h8gA	267	83.21		
1lla	628	83.54		
1gt6A	269	86.02	c.69.1.17	76342
1tib	269	86.17		
3bkpA	232	86.42		
1am2A	199	87.06	b.86.1.2	28381
2aaa	484	87.37		
1louA	101	89.62	d.58.14.1	39323