# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qqrA 118 0.9422 2yrvA 117 0.9458 2hqxA 246 1.100 b.34.9.1 136675 1mi8A 158 2.171 b.86.1.2 91279 2bkdN 134 2.539 1mhnA 59 3.041 b.34.9.1 84964 1w5rA 278 6.998 d.3.1.5 120643 1wgsA 133 7.610 b.34.13.3 114622 2b0vA 153 8.315 d.113.1.1 127650 2gfaA 119 10.52 b.34.9.1,b.34.9.1 135089,135090 1rlw 126 12.59 1a8pA 258 18.74 b.43.4.2,c.25.1.1 25654,31544 2arcA 164 19.16 b.82.4.1 28148 1z9nA 177 19.80 2f5kA 102 21.26 b.34.13.3 132995 1qtnB 95 21.94 1gvhA 396 22.08 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1sc3B 88 23.78 1edgA 380 24.02 c.1.8.3 28807 1i8dA 213 25.36 b.43.4.3,b.43.4.3 61953,61954 2qpwA 149 25.36 2dkoB 103 27.36 1ok0A 74 27.61 b.5.1.1 93191 1hoe 74 28.13 2r6hA 290 28.96 2qdxA 257 30.12 1wznA 252 30.14 c.66.1.43 121525 1t3lA 337 31.24 b.34.2.1,c.37.1.1 106358,106359 1nmeB 92 31.66 1d2oA 187 34.12 b.3.5.1,b.3.5.1 22625,22626 1kzlA 208 34.78 b.43.4.3,b.43.4.3 77635,77636 2jixB 225 35.55 1khcA 147 37.15 b.34.9.2 68608 1qwdA 177 37.68 b.60.1.1 96471 1ux6A 350 38.01 b.29.1.16,g.75.1.1 100145,100146 2h8gA 267 39.52 2cdpA 160 41.42 1wleA 501 43.75 1gwmA 153 43.99 b.18.1.19 83348 1vhmA 195 44.79 d.110.2.1 100691 2hftA 218 44.82 b.1.2.1,b.1.2.1 21951,21952 1zc1A 208 46.49 1lla 628 46.50 2yvpA 182 46.52 2j01E 206 46.61 2fjrA 189 47.04 2qfeA 148 50.46 1wfyA 104 51.81 d.15.1.5 114597 1zxfA 155 52.96 d.129.3.5 125771 2dyqA 144 54.10 1am2A 199 54.46 b.86.1.2 28381 1xf1A 926 60.44 1c1dA 355 62.10 c.2.1.7,c.58.1.1 30270,33918 1jj2B 337 64.46 b.43.3.2 63086 1zjrA 211 64.83 1oycA 400 65.55 c.1.4.1 28603 1d2eA 397 65.59 b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 1vp2A 208 66.21 c.51.4.1 113933 2f4eA 180 66.82 3bkpA 232 68.05 2ouiA 360 68.12 2aaa 484 68.41 1wmmA 145 68.43 b.122.1.8 121049 2hd9A 145 68.78 1em2A 229 69.24 d.129.3.2 41321 2ivwA 113 70.08 2av9A 147 70.28 d.38.1.1 127365 1fjgQ 105 70.47 b.40.4.5 25352 1ng2A 193 72.33 b.34.2.1,b.34.2.1 85660,85661 1avbA 226 73.12 b.29.1.1 24158 1vqoA 240 73.40 b.34.5.3,b.40.4.5 120361,120362 2jepA 395 74.56 1gwyA 175 74.96 b.97.1.1 83356 1avqA 228 76.28 c.52.1.13 33326 1xjvA 294 76.65 b.40.4.3,b.40.4.3 115396,115397 1hl9A 449 77.39 b.71.1.3,c.1.8.11 90650,90651 1ryaA 160 79.87 d.113.1.5 105122 1vqoB 338 81.15 b.43.3.2 120363 1xweA 151 84.78 b.40.3.3 116125 2dt5A 211 87.16 a.4.5.38,c.2.1.12 131708,131709 2e5yA 133 88.38 2dtrA 226 89.03 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1n27A 96 89.58 b.34.9.2 91549