# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1mi8A 158 0.4733 b.86.1.2 91279 2qqrA 118 1.716 2yrvA 117 1.884 2e5yA 133 5.129 1mhnA 59 5.942 b.34.9.1 84964 1w5rA 278 6.515 d.3.1.5 120643 2bkdN 134 6.904 1qtnB 95 8.386 2qe7H 135 9.117 2yvpA 182 9.142 2gfaA 119 9.595 b.34.9.1,b.34.9.1 135089,135090 1d2oA 187 9.613 b.3.5.1,b.3.5.1 22625,22626 2b0vA 153 9.639 d.113.1.1 127650 1kzlA 208 10.74 b.43.4.3,b.43.4.3 77635,77636 1i8dA 213 10.85 b.43.4.3,b.43.4.3 61953,61954 1ryaA 160 11.44 d.113.1.5 105122 1sc3B 88 11.45 1em2A 229 11.76 d.129.3.2 41321 2dkoB 103 11.93 2hqxA 246 12.84 b.34.9.1 136675 1xjvA 294 13.10 b.40.4.3,b.40.4.3 115396,115397 2h8gA 267 13.86 1rlw 126 14.14 1nmeB 92 14.64 1xr4A 509 14.85 c.124.1.2,c.124.1.2 115860,115861 1gwmA 153 15.47 b.18.1.19 83348 2bjrA 368 15.95 b.169.1.1,b.169.1.1 128628,128629 2i8tA 167 16.37 2f5kA 102 16.89 b.34.13.3 132995 2dyqA 144 17.47 1wgsA 133 18.28 b.34.13.3 114622 1wfyA 104 18.92 d.15.1.5 114597 1a8pA 258 20.73 b.43.4.2,c.25.1.1 25654,31544 2qdxA 257 21.58 1w7cA 747 22.64 1am2A 199 23.67 b.86.1.2 28381 1hoe 74 25.50 1gvhA 396 26.29 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2hd9A 145 30.59 1lla 628 31.58 2psoA 237 31.82 2hftA 218 32.40 b.1.2.1,b.1.2.1 21951,21952 1ok0A 74 32.50 b.5.1.1 93191 2dscA 212 32.57 1edgA 380 32.63 c.1.8.3 28807 1qwdA 177 34.32 b.60.1.1 96471 2hc8A 113 36.77 1at0 145 37.41 1wznA 252 37.70 c.66.1.43 121525 1rl2A 137 37.70 b.34.5.3,b.40.4.5 24610,25342 2pspA 106 41.75 g.16.1.1,g.16.1.1 44730,44731 2ouiA 360 43.17 1wgzA 510 45.09 2opkA 112 45.51 1x84A 189 45.66 d.113.1.2 121795 2alaA 391 45.86 b.1.18.4,f.10.1.1 126973,126974 2ar1A 172 48.30 b.122.1.8 127187 2eveA 157 48.73 b.122.1.8 132427 1vqoA 240 49.24 b.34.5.3,b.40.4.5 120361,120362 2fp3A 316 49.37 1ul7A 102 50.99 d.129.6.1 99540 1lcyA 325 51.66 b.36.1.4,b.47.1.1 73834,73835 1n9eA 787 52.51 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1pdqA 72 53.11 b.34.13.2 94590 1c5cH 215 53.33 b.1.1.1,b.1.1.2 20475,21439 1nycA 111 54.38 b.61.2.2 92336 1at0A 145 54.40 b.86.1.1 28374 2ivwA 113 56.37 2o0rA 411 56.69 2nwfA 141 57.25 1nnvA 110 57.78 d.17.7.1 92012 1pyoB 105 58.06 1oycA 400 58.53 c.1.4.1 28603 1ktgA 138 58.78 d.113.1.1 72972 2bsxA 253 59.07 c.56.2.1 129128 1vqoK 132 59.48 b.39.1.1 120372 1vk6A 269 59.67 d.113.1.4,d.113.1.4,g.41.14.1 100852,111609,111610 2bsaA 303 60.68 b.43.4.2,c.25.1.1 129078,129079 2r6hA 290 63.15 2pthA 193 63.29 c.56.3.1 33793 1xnzA 264 63.46 d.127.1.1 115673 2c5uA 375 64.11 2cy7A 396 64.38 2hbwA 235 65.33 2oqeA 660 65.55 b.30.2.1,d.17.2.1,d.17.2.1 139222,139223,139224 2pth 193 65.83 2g29A 417 66.05 1t3lA 337 66.93 b.34.2.1,c.37.1.1 106358,106359 1fjgQ 105 68.33 b.40.4.5 25352 1kt6A 183 68.36 b.60.1.1 84466 1jhfA 202 69.43 a.4.5.2,b.87.1.1 63057,63058 1wmmA 145 71.27 b.122.1.8 121049 1q1gA 276 71.89 c.56.2.1 95574 1z85A 234 73.97 1wleA 501 74.00 1ux6A 350 76.12 b.29.1.16,g.75.1.1 100145,100146 1xu1R 42 76.52 g.24.1.2 116036 1kmkA 406 77.64 c.67.1.3 68696 1zjrA 211 79.59 1pl8A 356 79.72 b.35.1.2,c.2.1.1 94878,94879 1v8hA 107 79.99 b.1.18.19 119870 3cngA 189 80.86 2r55A 231 82.96 1vp2A 208 85.07 c.51.4.1 113933 1xf1A 926 86.28 2ee1A 64 87.21 1g8lA 411 87.27 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1jvwA 167 87.59 d.26.1.1 71907 2uyoA 310 87.77