# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yrvA	117	1.366		
1mi8A	158	4.257	b.86.1.2	91279
1mhnA	59	4.427	b.34.9.1	84964
1edgA	380	4.530	c.1.8.3	28807
2hqxA	246	5.766	b.34.9.1	136675
1w5rA	278	9.187	d.3.1.5	120643
2qqrA	118	9.350		
2b0vA	153	10.36	d.113.1.1	127650
1i8dA	213	10.79	b.43.4.3,b.43.4.3	61953,61954
1qtnB	95	14.22		
1sc3B	88	14.75		
2bkdN	134	16.02		
1c1dA	355	17.87	c.2.1.7,c.58.1.1	30270,33918
2pz0A	252	18.66		
1kzlA	208	18.68	b.43.4.3,b.43.4.3	77635,77636
2dyqA	144	18.76		
1gwmA	153	19.55	b.18.1.19	83348
1nmeB	92	20.15		
2dkoB	103	20.84		
2f5kA	102	22.31	b.34.13.3	132995
1qwdA	177	24.01	b.60.1.1	96471
1avqA	228	24.29	c.52.1.13	33326
1vhmA	195	25.83	d.110.2.1	100691
1oycA	400	27.52	c.1.4.1	28603
1hoe	74	28.99		
1jj2B	337	29.14	b.43.3.2	63086
1gvhA	396	29.80	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1wgsA	133	30.04	b.34.13.3	114622
2gfaA	119	30.86	b.34.9.1,b.34.9.1	135089,135090
1ok0A	74	31.11	b.5.1.1	93191
1vecA	206	31.36	c.37.1.19	100575
1z9nA	177	33.21		
1em2A	229	37.77	d.129.3.2	41321
2jepA	395	38.59		
2r6hA	290	39.67		
1zjrA	211	41.66		
1vqoB	338	41.80	b.43.3.2	120363
1xf1A	926	41.86		
1vp2A	208	45.67	c.51.4.1	113933
2ouiA	360	47.25		
2yvpA	182	47.98		
1arsA	396	52.30	c.67.1.1	34287
1t3lA	337	54.72	b.34.2.1,c.37.1.1	106358,106359
1lla	628	55.87		
1am2A	199	59.83	b.86.1.2	28381
2hftA	218	61.92	b.1.2.1,b.1.2.1	21951,21952
1pyoB	105	63.88		
2j01E	206	64.90		
2av9A	147	68.73	d.38.1.1	127365
1pn2A	280	71.36	d.38.1.4,d.38.1.4	94930,94931
2arcA	164	71.93	b.82.4.1	28148
1wleA	501	72.54		
3bkpA	232	75.08		
1a8pA	258	75.92	b.43.4.2,c.25.1.1	25654,31544
2pz4A	239	76.82		
3bh0A	315	80.19		
1pdqA	72	80.27	b.34.13.2	94590
1nnvA	110	80.42	d.17.7.1	92012
1sesA	421	83.29	a.2.7.1,d.104.1.1	15710,40710
1wfyA	104	84.47	d.15.1.5	114597
1d2oA	187	84.91	b.3.5.1,b.3.5.1	22625,22626
2e55A	208	85.25		
1ovnA	248	87.72	a.71.1.1,c.47.1.7	93602,93603
2dtrA	226	89.42	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1vc3B	97	89.46		
1kmkA	406	89.70	c.67.1.3	68696