# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yrvA	117	2.274		
1edgA	380	3.154	c.1.8.3	28807
2b0vA	153	6.721	d.113.1.1	127650
1mi8A	158	6.940	b.86.1.2	91279
2hqxA	246	7.042	b.34.9.1	136675
1avqA	228	8.975	c.52.1.13	33326
1w5rA	278	9.384	d.3.1.5	120643
2qqrA	118	10.63		
1mhnA	59	11.94	b.34.9.1	84964
1kzlA	208	13.51	b.43.4.3,b.43.4.3	77635,77636
2jepA	395	13.85		
1i8dA	213	14.07	b.43.4.3,b.43.4.3	61953,61954
2pz0A	252	16.10		
1vhmA	195	19.19	d.110.2.1	100691
2bkdN	134	19.72		
2dyqA	144	20.55		
1gwmA	153	21.82	b.18.1.19	83348
1jj2B	337	22.83	b.43.3.2	63086
1qwdA	177	23.16	b.60.1.1	96471
1qtnB	95	23.32		
1sc3B	88	23.80		
1zjrA	211	28.79		
1gvhA	396	31.08	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1z9nA	177	32.18		
1nmeB	92	32.83		
2dkoB	103	35.10		
2r6hA	290	36.13		
1vqoB	338	36.17	b.43.3.2	120363
2av9A	147	38.22	d.38.1.1	127365
2gfaA	119	39.94	b.34.9.1,b.34.9.1	135089,135090
1wleA	501	40.97		
1wgsA	133	42.96	b.34.13.3	114622
1c1dA	355	45.71	c.2.1.7,c.58.1.1	30270,33918
1oycA	400	46.06	c.1.4.1	28603
1vp2A	208	46.23	c.51.4.1	113933
2hftA	218	47.60	b.1.2.1,b.1.2.1	21951,21952
1lla	628	47.69		
2ouiA	360	47.97		
1wfyA	104	48.83	d.15.1.5	114597
2yvpA	182	48.93		
2arcA	164	50.92	b.82.4.1	28148
1hoe	74	51.07		
1vecA	206	51.41	c.37.1.19	100575
1t3lA	337	52.17	b.34.2.1,c.37.1.1	106358,106359
2j01E	206	55.24		
1xf1A	926	55.52		
1pn2A	280	55.98	d.38.1.4,d.38.1.4	94930,94931
1ok0A	74	56.03	b.5.1.1	93191
1wznA	252	57.73	c.66.1.43	121525
2f5kA	102	58.17	b.34.13.3	132995
1d2oA	187	58.87	b.3.5.1,b.3.5.1	22625,22626
1em2A	229	60.37	d.129.3.2	41321
2fjrA	189	63.19		
3bh0A	315	65.86		
2ca9A	148	70.30		
1a8pA	258	71.37	b.43.4.2,c.25.1.1	25654,31544
2pthA	193	72.73	c.56.3.1	33793
1sesA	421	76.95	a.2.7.1,d.104.1.1	15710,40710
1am2A	199	77.75	b.86.1.2	28381
1v0aA	178	78.41	b.18.1.30	119815
2qdxA	257	80.27		
1xr4A	509	80.57	c.124.1.2,c.124.1.2	115860,115861
2dtrA	226	82.29	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
2pth	193	82.57		
1t70A	255	83.13	d.159.1.9	112275
2jixB	225	83.61		
1ul7A	102	84.80	d.129.6.1	99540
1arsA	396	84.84	c.67.1.1	34287
1kmkA	406	85.27	c.67.1.3	68696
1ryaA	160	88.96	d.113.1.5	105122