# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yrvA	117	4.668		
1mi8A	158	5.806	b.86.1.2	91279
1mhnA	59	6.416	b.34.9.1	84964
2dyqA	144	6.854		
2bkdN	134	7.810		
2dkoB	103	8.639		
1qtnB	95	11.78		
2e5yA	133	15.21		
2hqxA	246	15.64	b.34.9.1	136675
1dk8A	147	16.72	a.91.1.1	18548
1nmeB	92	17.49		
2qqrA	118	19.33		
1xr4A	509	22.58	c.124.1.2,c.124.1.2	115860,115861
1nnvA	110	24.78	d.17.7.1	92012
1sc3B	88	28.37		
1wgsA	133	29.21	b.34.13.3	114622
1jj2B	337	32.87	b.43.3.2	63086
2qe7H	135	38.17		
1pyoB	105	38.40		
2hftA	218	40.87	b.1.2.1,b.1.2.1	21951,21952
1i8dA	213	41.31	b.43.4.3,b.43.4.3	61953,61954
1qwdA	177	44.31	b.60.1.1	96471
1wleA	501	52.56		
2ouxA	286	55.43		
1wmmA	145	56.59	b.122.1.8	121049
2f5kA	102	56.92	b.34.13.3	132995
1wmsA	177	58.66	c.37.1.8	109414
2alaA	391	58.74	b.1.18.4,f.10.1.1	126973,126974
3bpoC	314	61.78		
2dbnA	461	66.78		
2b2yA	187	67.20	b.34.13.2,b.34.13.2	127754,127755
2j01E	206	68.78		
1914	232	78.53		
1am2A	199	81.41	b.86.1.2	28381
2fp3A	316	83.03		
1fxjA	331	87.36	b.81.1.4,c.68.1.5	28062,34520
2yvyA	278	88.32		
2arcA	164	88.66	b.82.4.1	28148