# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yrvA	117	3.282		
1mhnA	59	5.037	b.34.9.1	84964
2b0vA	153	6.234	d.113.1.1	127650
1mi8A	158	7.095	b.86.1.2	91279
2qqrA	118	7.772		
1qwdA	177	8.168	b.60.1.1	96471
2hqxA	246	8.183	b.34.9.1	136675
2yvpA	182	9.017		
1w5rA	278	12.55	d.3.1.5	120643
2dyqA	144	12.68		
1gvhA	396	15.85	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1qtnB	95	15.98		
1nmeB	92	16.56		
2dkoB	103	17.24		
2pz0A	252	18.55		
1sc3B	88	19.44		
1z9nA	177	24.90		
1oycA	400	25.58	c.1.4.1	28603
1i8dA	213	26.08	b.43.4.3,b.43.4.3	61953,61954
1kzlA	208	26.12	b.43.4.3,b.43.4.3	77635,77636
1zjrA	211	27.94		
1edgA	380	28.61	c.1.8.3	28807
1vecA	206	31.13	c.37.1.19	100575
2dscA	212	31.97		
2bkdN	134	32.13		
1xf1A	926	33.23		
1wgsA	133	33.50	b.34.13.3	114622
2f5kA	102	35.28	b.34.13.3	132995
2r6hA	290	35.82		
2gfaA	119	37.51	b.34.9.1,b.34.9.1	135089,135090
1em2A	229	37.71	d.129.3.2	41321
2bjrA	368	37.74	b.169.1.1,b.169.1.1	128628,128629
3bkpA	232	38.84		
1avqA	228	38.89	c.52.1.13	33326
2e5yA	133	39.92		
1lla	628	42.08		
1ryaA	160	42.33	d.113.1.5	105122
1gwmA	153	43.75	b.18.1.19	83348
2j01E	206	43.82		
1jj2B	337	44.50	b.43.3.2	63086
1vp2A	208	45.09	c.51.4.1	113933
1vhmA	195	48.59	d.110.2.1	100691
2e55A	208	49.45		
2qdxA	257	49.88		
2hftA	218	52.22	b.1.2.1,b.1.2.1	21951,21952
2h8gA	267	53.41		
1ux6A	350	55.53	b.29.1.16,g.75.1.1	100145,100146
1a8pA	258	55.61	b.43.4.2,c.25.1.1	25654,31544
1c1dA	355	56.32	c.2.1.7,c.58.1.1	30270,33918
2r55A	231	59.95		
1sesA	421	60.57	a.2.7.1,d.104.1.1	15710,40710
2pthA	193	62.42	c.56.3.1	33793
1xr4A	509	64.97	c.124.1.2,c.124.1.2	115860,115861
1pyoB	105	68.17		
1d2oA	187	68.81	b.3.5.1,b.3.5.1	22625,22626
1hoe	74	69.46		
2hd9A	145	71.12		
2dt5A	211	71.30	a.4.5.38,c.2.1.12	131708,131709
2ouiA	360	72.34		
1vqoB	338	72.59	b.43.3.2	120363
2arcA	164	73.07	b.82.4.1	28148
1ok0A	74	74.30	b.5.1.1	93191
1t3lA	337	75.09	b.34.2.1,c.37.1.1	106358,106359
1pdqA	72	75.24	b.34.13.2	94590
3bm4A	210	76.38		
2pth	193	76.43		
1d2eA	397	76.61	b.43.3.1,b.44.1.1,c.37.1.8	25701,25741,32136
1am2A	199	77.28	b.86.1.2	28381
1zxfA	155	78.84	d.129.3.5	125771
1wleA	501	79.64		
1fjgQ	105	80.90	b.40.4.5	25352
1ul7A	102	83.36	d.129.6.1	99540
2qfeA	148	83.75		
3bh0A	315	84.84		
1wznA	252	87.13	c.66.1.43	121525