# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3c2uA 538 0.6187 1suuA 312 1.805 b.68.10.1 99006 2biwA 490 2.487 1e6pA 499 2.783 b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 3clwA 507 4.137 2v74B 346 5.013 2aaa 484 5.552 2hqxA 246 6.231 b.34.9.1 136675 2vgaA 207 7.158 1wkyA 464 8.266 b.18.1.31,c.1.8.3 120992,120993 1ksiA 642 9.475 b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 7taa 478 9.99 2py5A 575 11.27 2z1pA 348 12.50 2eabA 899 13.78 1mi8A 158 14.07 b.86.1.2 91279 1xf1A 926 14.30 1vf8A 377 15.16 c.1.8.5,d.26.3.1 120029,120030 2b0vA 153 15.19 d.113.1.1 127650 2yrvA 117 15.28 2d1wA 638 17.27 b.30.2.1,d.17.2.1,d.17.2.1 131145,131146,131147 1r6vA 671 17.53 c.41.1.1 111710 3bkpA 232 18.32 1mhnA 59 18.58 b.34.9.1 84964 2dscA 212 22.36 1iyeA 309 22.50 e.17.1.1 83786 1z90A 469 23.40 b.81.1.4,c.68.1.5 124732,124733 2g9zA 348 24.73 2qqrA 118 25.54 2jixB 225 26.41 1c4kA 730 27.49 c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 2qpxA 376 27.61 1ms9A 648 28.14 b.29.1.15,b.68.1.1 85088,85089 1q32A 544 28.33 d.136.1.3,d.136.1.3 104507,104508 1epwA 1290 28.89 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1d4aA 273 29.70 c.23.5.3 31219 3psgA 370 30.34 b.50.1.2 26841 2hahA 116 30.87 3sil 379 32.24 2bkdN 134 32.82 2yvpA 182 34.49 1uasA 362 34.72 b.71.1.1,c.1.8.1 88388,88389 1moqA 368 34.83 c.80.1.1 35302 1d8cA 723 37.01 c.1.13.1 29325 2dyqA 144 37.13 2yrxA 451 38.03 1ynfA 458 40.78 d.126.1.7 123723 2vovA 336 41.78 1vffA 423 41.80 c.1.8.4 120033 1w5rA 278 42.43 d.3.1.5 120643 1e43A 483 42.51 b.71.1.1,c.1.8.1 59217,59218 1mkaA 171 43.22 d.38.1.2 38543 1qtnB 95 43.69 1oycA 400 45.31 c.1.4.1 28603 1am2A 199 46.60 b.86.1.2 28381 1i8dA 213 46.98 b.43.4.3,b.43.4.3 61953,61954 2pz0A 252 47.41 2g3mA 693 47.76 1jvbA 347 49.39 b.35.1.2,c.2.1.1 77181,77182 1ryaA 160 50.30 d.113.1.5 105122 1bxoA 323 51.95 b.50.1.2 26805 1p49A 562 52.86 c.76.1.2 94089 2osxA 481 55.82 2aaaA 484 57.10 b.71.1.1,c.1.8.1 27777,28764 1eu1A 780 57.44 b.52.2.2,c.81.1.1 26903,35311 1arsA 396 57.74 c.67.1.1 34287 1u69A 163 57.94 d.32.1.7 107699 1xwvA 129 61.60 b.1.18.7 116134 1ep3B 262 62.38 b.43.4.2,c.25.1.3 25664,31554 1kdvA 370 62.88 c.41.1.2 68486 1twfF 155 64.07 a.143.1.2 112731 1h2kA 349 64.22 b.82.2.6 76572 2f4nA 273 65.83 2qpwA 149 65.95 1x7dA 350 67.34 c.2.1.13 114927 1goiA 499 69.15 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1wgsA 133 69.93 b.34.13.3 114622 2gfaA 119 70.41 b.34.9.1,b.34.9.1 135089,135090 1ecfA 504 72.85 c.61.1.1,d.153.1.1 34053,41820 1dl2A 511 73.21 a.102.2.1 18844 2ebnA 289 73.38 c.1.8.5 28990 2r6hA 290 74.92 2v7bA 529 75.88 1d3cA 686 76.09 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1vecA 206 76.35 c.37.1.19 100575 1hx0A 496 77.91 b.71.1.1,c.1.8.1 61346,61347 1wp5A 323 78.91 b.68.10.1 114780 1vhmA 195 80.54 d.110.2.1 100691 2ek6A 95 81.90 1x84A 189 82.67 d.113.1.2 121795 1k3iA 656 82.71 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1em2A 229 82.96 d.129.3.2 41321 2f5kA 102 83.18 b.34.13.3 132995 1eudA 311 83.29 c.2.1.8,c.23.4.1 30312,31140 1ui7A 638 83.34 b.30.2.1,d.17.2.1,d.17.2.1 99413,99414,99415 1t6eX 381 85.44 b.50.1.2 106564 1vp2A 208 87.70 c.51.4.1 113933 2q16A 219 89.00