# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yrvA	117	3.934		
1mhnA	59	7.638	b.34.9.1	84964
2hqxA	246	8.352	b.34.9.1	136675
1mi8A	158	11.61	b.86.1.2	91279
2qqrA	118	12.56		
1w5rA	278	13.27	d.3.1.5	120643
1qwdA	177	14.97	b.60.1.1	96471
1qtnB	95	16.65		
1edgA	380	17.06	c.1.8.3	28807
2dkoB	103	17.20		
2b0vA	153	17.27	d.113.1.1	127650
1nmeB	92	17.74		
1z9nA	177	19.97		
2pz0A	252	20.26		
1sc3B	88	20.33		
1oycA	400	22.61	c.1.4.1	28603
2dyqA	144	23.60		
1lla	628	24.59		
2hftA	218	27.06	b.1.2.1,b.1.2.1	21951,21952
2yvpA	182	28.34		
1vp2A	208	32.50	c.51.4.1	113933
1i8dA	213	33.18	b.43.4.3,b.43.4.3	61953,61954
2r6hA	290	37.18		
2bkdN	134	37.31		
1zjrA	211	37.49		
1kzlA	208	37.65	b.43.4.3,b.43.4.3	77635,77636
1gvhA	396	39.99	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2j01E	206	45.61		
2r55A	231	45.76		
2gfaA	119	46.00	b.34.9.1,b.34.9.1	135089,135090
1xf1A	926	46.30		
1ryaA	160	46.85	d.113.1.5	105122
3bkpA	232	48.14		
1vhmA	195	49.26	d.110.2.1	100691
1d2oA	187	50.22	b.3.5.1,b.3.5.1	22625,22626
1wgsA	133	51.98	b.34.13.3	114622
1am2A	199	56.29	b.86.1.2	28381
2jepA	395	57.22		
1zxfA	155	57.71	d.129.3.5	125771
1em2A	229	57.82	d.129.3.2	41321
1gwmA	153	58.19	b.18.1.19	83348
2fp3A	316	60.18		
2h8gA	267	61.78		
1ux6A	350	61.87	b.29.1.16,g.75.1.1	100145,100146
1jj2B	337	63.03	b.43.3.2	63086
1pyoB	105	67.81		
1t3lA	337	69.14	b.34.2.1,c.37.1.1	106358,106359
2jixB	225	69.15		
1hoe	74	71.85		
2qfeA	148	73.03		
1iazA	179	73.21	b.97.1.1	62131
2e5yA	133	74.64		
1lwjA	441	76.67	b.71.1.1,c.1.8.1	74303,74304
1gwyA	175	80.07	b.97.1.1	83356
2ouiA	360	81.74		
1ok0A	74	83.47	b.5.1.1	93191
2fjrA	189	86.60		
2arcA	164	87.35	b.82.4.1	28148
1vecA	206	87.41	c.37.1.19	100575
2aqpA	164	87.50		
3bh0A	315	88.53		
1c1dA	355	89.84	c.2.1.7,c.58.1.1	30270,33918