# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yrvA	117	2.676		
2hqxA	246	7.230	b.34.9.1	136675
2b0vA	153	8.870	d.113.1.1	127650
1edgA	380	9.012	c.1.8.3	28807
2qqrA	118	10.78		
2bkdN	134	11.59		
1mhnA	59	13.10	b.34.9.1	84964
1vhmA	195	13.92	d.110.2.1	100691
1z9nA	177	15.85		
1w5rA	278	16.40	d.3.1.5	120643
2r6hA	290	17.23		
1qtnB	95	19.63		
2dyqA	144	19.91		
2yvpA	182	20.89		
1sc3B	88	21.75		
2dkoB	103	23.44		
1qwdA	177	26.22	b.60.1.1	96471
1nmeB	92	26.88		
1i8dA	213	28.63	b.43.4.3,b.43.4.3	61953,61954
1vecA	206	30.37	c.37.1.19	100575
1oycA	400	30.51	c.1.4.1	28603
1lla	628	31.06		
2jepA	395	31.66		
1kzlA	208	32.44	b.43.4.3,b.43.4.3	77635,77636
1avqA	228	33.55	c.52.1.13	33326
2hftA	218	34.12	b.1.2.1,b.1.2.1	21951,21952
2pz0A	252	34.89		
2jixB	225	37.36		
1ryaA	160	37.88	d.113.1.5	105122
1mi8A	158	38.54	b.86.1.2	91279
1wgsA	133	42.10	b.34.13.3	114622
1gwmA	153	43.11	b.18.1.19	83348
1ux6A	350	43.41	b.29.1.16,g.75.1.1	100145,100146
1vp2A	208	44.67	c.51.4.1	113933
1zxfA	155	47.46	d.129.3.5	125771
2gfaA	119	49.11	b.34.9.1,b.34.9.1	135089,135090
1em2A	229	51.99	d.129.3.2	41321
1lwjA	441	57.55	b.71.1.1,c.1.8.1	74303,74304
1gvhA	396	59.20	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1zjrA	211	62.89		
1ok0A	74	63.43	b.5.1.1	93191
1iazA	179	64.49	b.97.1.1	62131
1hoe	74	65.47		
1gwyA	175	66.53	b.97.1.1	83356
1twfF	155	66.79	a.143.1.2	112731
1wleA	501	67.06		
2aqpA	164	67.10		
1t3lA	337	67.47	b.34.2.1,c.37.1.1	106358,106359
1wznA	252	67.84	c.66.1.43	121525
2j01E	206	68.54		
1c1dA	355	69.64	c.2.1.7,c.58.1.1	30270,33918
1wmsA	177	70.07	c.37.1.8	109414
2r55A	231	70.59		
2av9A	147	72.09	d.38.1.1	127365
1ovnA	248	72.46	a.71.1.1,c.47.1.7	93602,93603
1a8pA	258	73.28	b.43.4.2,c.25.1.1	25654,31544
2dscA	212	73.33		
1zc1A	208	75.55		
1xw2A	405	76.53	a.102.1.2	122389
1arsA	396	78.88	c.67.1.1	34287
1rlw	126	81.81		
1fjgQ	105	82.23	b.40.4.5	25352
2ca9A	148	82.44		
2dt5A	211	82.96	a.4.5.38,c.2.1.12	131708,131709
2ouiA	360	83.60		
2e55A	208	84.16		
2bj7A	138	89.54	a.43.1.3,d.58.18.4	128608,128609