# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yrvA	117	3.080		
1mhnA	59	8.034	b.34.9.1	84964
1qtnB	95	8.079		
1kzlA	208	9.677	b.43.4.3,b.43.4.3	77635,77636
2qqrA	118	10.04		
2hqxA	246	11.08	b.34.9.1	136675
1sc3B	88	11.34		
2yvpA	182	11.63		
2b0vA	153	11.91	d.113.1.1	127650
1i8dA	213	12.25	b.43.4.3,b.43.4.3	61953,61954
1mi8A	158	13.36	b.86.1.2	91279
1nmeB	92	13.79		
2dkoB	103	14.43		
1qwdA	177	16.32	b.60.1.1	96471
1lla	628	17.14		
2bkdN	134	19.15		
1ryaA	160	19.46	d.113.1.5	105122
1oycA	400	20.71	c.1.4.1	28603
1gvhA	396	21.64	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2hftA	218	22.73	b.1.2.1,b.1.2.1	21951,21952
2r6hA	290	24.64		
2dscA	212	25.78		
1gwmA	153	25.91	b.18.1.19	83348
1xr4A	509	31.42	c.124.1.2,c.124.1.2	115860,115861
2gfaA	119	31.71	b.34.9.1,b.34.9.1	135089,135090
2dyqA	144	33.55		
1em2A	229	33.71	d.129.3.2	41321
1edgA	380	38.70	c.1.8.3	28807
1w5rA	278	39.13	d.3.1.5	120643
1vp2A	208	39.30	c.51.4.1	113933
1wgsA	133	39.76	b.34.13.3	114622
1z9nA	177	40.98		
1zxfA	155	45.54	d.129.3.5	125771
1t3lA	337	46.40	b.34.2.1,c.37.1.1	106358,106359
1ok0A	74	46.54	b.5.1.1	93191
1vecA	206	46.78	c.37.1.19	100575
2jepA	395	47.37		
1rlw	126	47.70		
2fp3A	316	52.44		
1avqA	228	53.18	c.52.1.13	33326
1lwjA	441	54.19	b.71.1.1,c.1.8.1	74303,74304
1jj2B	337	57.43	b.43.3.2	63086
1pyoB	105	58.25		
1hoe	74	59.15		
2pspA	106	59.16	g.16.1.1,g.16.1.1	44730,44731
2psoA	237	62.22		
1vhmA	195	65.95	d.110.2.1	100691
2qipA	165	66.48		
1wznA	252	66.54	c.66.1.43	121525
2o0rA	411	67.37		
2f5kA	102	67.57	b.34.13.3	132995
3bkpA	232	68.52		
1zjrA	211	71.15		
2j01E	206	71.22		
1jj2P	95	76.83	b.34.5.1	63101
1xttA	216	77.89	c.61.1.1	122300
1a8pA	258	79.98	b.43.4.2,c.25.1.1	25654,31544
1d2oA	187	81.40	b.3.5.1,b.3.5.1	22625,22626
2h8gA	267	81.71		
1x84A	189	83.98	d.113.1.2	121795
3bh0A	315	84.98		
2r55A	231	86.43		
1vqoB	338	89.45	b.43.3.2	120363