# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1edgA	380	2.206	c.1.8.3	28807
2yrvA	117	3.431		
1mi8A	158	6.138	b.86.1.2	91279
1kzlA	208	6.247	b.43.4.3,b.43.4.3	77635,77636
1mhnA	59	6.529	b.34.9.1	84964
2jepA	395	8.369		
1i8dA	213	8.834	b.43.4.3,b.43.4.3	61953,61954
2hqxA	246	10.21	b.34.9.1	136675
2dyqA	144	13.68		
2qqrA	118	14.07		
1z9nA	177	14.72		
2bkdN	134	15.78		
2b0vA	153	16.02	d.113.1.1	127650
1avqA	228	17.62	c.52.1.13	33326
1qtnB	95	18.20		
1vhmA	195	19.76	d.110.2.1	100691
2hftA	218	20.41	b.1.2.1,b.1.2.1	21951,21952
2r6hA	290	21.30		
1sc3B	88	21.92		
2dkoB	103	22.17		
2yvpA	182	22.18		
1w5rA	278	24.25	d.3.1.5	120643
1nmeB	92	25.00		
1lla	628	25.32		
1xr4A	509	26.61	c.124.1.2,c.124.1.2	115860,115861
1gwmA	153	28.94	b.18.1.19	83348
1jj2B	337	29.14	b.43.3.2	63086
2jixB	225	33.13		
1vecA	206	34.08	c.37.1.19	100575
2dscA	212	35.14		
1em2A	229	36.26	d.129.3.2	41321
2gfaA	119	37.77	b.34.9.1,b.34.9.1	135089,135090
2cyeA	133	39.24	d.38.1.1	131021
1qwdA	177	41.17	b.60.1.1	96471
1zc1A	208	43.18		
2aqpA	164	43.34		
1oycA	400	45.51	c.1.4.1	28603
2arcA	164	46.73	b.82.4.1	28148
2f5kA	102	48.53	b.34.13.3	132995
1nnvA	110	52.06	d.17.7.1	92012
1gvhA	396	52.56	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1vqoB	338	53.69	b.43.3.2	120363
1vp8A	201	55.86	c.49.1.2	113947
1ryaA	160	56.33	d.113.1.5	105122
1vp2A	208	56.36	c.51.4.1	113933
1zxfA	155	56.73	d.129.3.5	125771
2qfeA	148	56.99		
1wznA	252	57.20	c.66.1.43	121525
1wleA	501	59.70		
2av9A	147	62.94	d.38.1.1	127365
1pn2A	280	64.21	d.38.1.4,d.38.1.4	94930,94931
1t3lA	337	66.96	b.34.2.1,c.37.1.1	106358,106359
1d2oA	187	67.28	b.3.5.1,b.3.5.1	22625,22626
1c1dA	355	68.39	c.2.1.7,c.58.1.1	30270,33918
1wgsA	133	71.37	b.34.13.3	114622
2j01E	206	73.05		
1ok0A	74	74.09	b.5.1.1	93191
2ca9A	148	74.58		
2nyiA	195	74.84		
2pz0A	252	75.62		
1a8pA	258	79.37	b.43.4.2,c.25.1.1	25654,31544
2dtrA	226	80.06	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1zjrA	211	84.48		
1hoe	74	84.89		
2qdxA	257	85.54		
1xjvA	294	87.17	b.40.4.3,b.40.4.3	115396,115397