# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yrvA	117	0.9788		
2dkoB	103	3.310		
2b2yA	187	9.552	b.34.13.2,b.34.13.2	127754,127755
2bkdN	134	9.900		
1qtnB	95	10.73		
2hqxA	246	10.89	b.34.9.1	136675
1ppjE	196	20.42	b.33.1.1,f.23.12.1	104260,104261
1mi8A	158	20.99	b.86.1.2	91279
2qpwA	149	21.10		
1nmeB	92	21.86		
1vqoQ	96	21.94	b.34.5.1	120378
1jj2P	95	25.32	b.34.5.1	63101
1qwdA	177	31.96	b.60.1.1	96471
2ra8A	362	38.24		
1sc3B	88	39.55		
2dyqA	144	40.33		
1zkkA	167	42.11		
1xr4A	509	42.79	c.124.1.2,c.124.1.2	115860,115861
2fl7A	232	44.67		
2rerA	173	46.55		
2oj5A	165	46.55		
1wguA	136	54.04	b.55.1.2	114623
1ylnA	252	58.09	b.45.2.1,b.45.2.2	123657,123658
2nsqA	155	58.49		
3bh0A	315	59.38		
2qqrA	118	63.54		
1fzqA	181	63.94	c.37.1.8	32060
2p0pA	126	65.88		
2ouxA	286	66.16		
1pyoB	105	69.75		
2ar9A	278	74.87		
1dk8A	147	78.87	a.91.1.1	18548
1nnvA	110	81.20	d.17.7.1	92012
2a90A	240	85.61		
1div	149	87.76