# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2yrvA	117	12.00		
1mhnA	59	13.88	b.34.9.1	84964
1edgA	380	18.41	c.1.8.3	28807
2bkdN	134	18.95		
1qwdA	177	20.81	b.60.1.1	96471
2hqxA	246	24.22	b.34.9.1	136675
2dkoB	103	26.06		
1ok0A	74	28.68	b.5.1.1	93191
1hoe	74	32.98		
1l7mA	211	33.14	c.108.1.4	73664
2jn9A	105	36.86		
1wmmA	145	40.97	b.122.1.8	121049
2z0dA	357	41.84		
1pjcA	361	41.90	c.2.1.4,c.23.12.2	30101,31361
1mi8A	158	42.23	b.86.1.2	91279
2jepA	395	44.94		
1zjrA	211	45.46		
2f5kA	102	48.70	b.34.13.3	132995
2qpwA	149	49.58		
1vg8A	207	49.64	c.37.1.8	108606
1mr3F	181	52.01	c.37.1.8	79422
2qqrA	118	54.64		
1nmeB	92	56.56		
1fzqA	181	58.35	c.37.1.8	32060
1wgsA	133	58.82	b.34.13.3	114622
2oqkA	117	62.04		
1kjwA	295	63.09	b.34.2.1,c.37.1.1	68643,68644
2i9uA	439	63.27		
2eryA	172	63.84	c.37.1.8	132306
1w5rA	278	64.39	d.3.1.5	120643
1qtnB	95	66.47		
1qo2A	241	76.36	c.1.2.1	28533
2b2yA	187	77.06	b.34.13.2,b.34.13.2	127754,127755
2j6pA	152	77.10		
1sc3B	88	80.38		
2qlcA	126	81.94		
1o3yA	166	82.01	c.37.1.8	86618
1kshA	186	85.40	c.37.1.8	72914
2f2lX	167	87.25	d.118.1.1	132844
1vecA	206	87.97	c.37.1.19	100575
2p0pA	126	88.09		
1r8sA	164	89.34	c.37.1.8	97247