# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ckkA 127 1.858 2bkdN 134 1.910 1mi8A 158 2.120 b.86.1.2 91279 1mhnA 59 2.306 b.34.9.1 84964 2g3rA 123 2.804 b.34.9.1,b.34.9.1 134570,134571 1kzlA 208 3.023 b.43.4.3,b.43.4.3 77635,77636 2qqrA 118 3.259 1khcA 147 4.312 b.34.9.2 68608 1nkqA 259 4.437 d.177.1.1 103862 2f5kA 102 5.869 b.34.13.3 132995 1sawA 225 6.983 d.177.1.1 112050 2gjgA 248 7.526 1at0 145 8.243 1gttA 429 8.398 d.177.1.1,d.177.1.1 70529,70530 2gfaA 119 8.431 b.34.9.1,b.34.9.1 135089,135090 1n3hA 207 9.219 b.55.1.2 91564 1wzoA 246 9.402 1i8dA 213 11.56 b.43.4.3,b.43.4.3 61953,61954 2hqxA 246 12.33 b.34.9.1 136675 1g291 372 13.30 1uolA 219 14.53 b.2.5.2 99695 1at0A 145 14.64 b.86.1.1 28374 1y14B 171 14.98 b.40.4.5,d.230.1.1 116323,116324 2ii1A 301 15.04 2geeA 203 17.87 1abrB 267 17.99 b.42.2.1,b.42.2.1 25563,25564 1rowA 109 19.33 b.1.11.2 97676 1rl2A 137 19.70 b.34.5.3,b.40.4.5 24610,25342 1oz2A 331 19.84 b.34.9.3,b.34.9.3,b.34.9.3 93781,93782,93783 2eqjA 66 20.08 1tupA 219 20.79 b.2.5.2 22434 2q18X 293 22.87 2biqA 219 24.01 2e5pA 68 24.89 1pdqA 72 25.42 b.34.13.2 94590 1xniA 118 26.28 b.34.9.1,b.34.9.1 115582,115583 2pmaA 146 26.28 2e63A 170 26.51 1q6hA 224 26.73 d.26.1.1 95975 1iz6A 138 29.18 b.34.5.2,b.40.4.5 76976,76977 2it1A 362 30.76 2gqvA 62 33.45 b.34.4.1 135515 2bw0A 329 34.43 b.46.1.1,c.65.1.1 129303,129304 1n27A 96 35.84 b.34.9.2 91549 1w5rA 278 39.57 d.3.1.5 120643 2bemA 170 39.71 b.1.18.2 116698 2cwpA 112 40.88 2ho9A 167 41.92 1l3aA 228 42.91 d.18.1.2 73531 2do3A 69 44.91 b.34.5.5 131596 3cfuA 159 45.74 1vie 62 45.80 1sz6B 263 45.91 b.42.2.1,b.42.2.1 112172,112173 1q6uA 245 46.48 d.26.1.1 95998 1ugpB 226 47.20 b.34.4.4 107832 1k3rA 268 47.43 b.40.4.10,c.116.1.2 72018,72019 2ej8A 160 48.26 1s3iA 310 49.33 b.46.1.1,c.65.1.1 98435,98436 2pth 193 50.63 2e70A 71 51.46 3ceyA 474 52.02 1oa8A 133 52.69 b.145.1.1 92698 1jj2P 95 53.17 b.34.5.1 63101 1vc3B 97 53.56 1zp7A 206 54.16 1ireB 228 55.06 b.34.4.4 76770 1u1zA 168 56.87 d.38.1.6 107602 1pfbA 55 57.52 b.34.13.2 94655 1ylnA 252 59.07 b.45.2.1,b.45.2.2 123657,123658 1jvwA 167 60.50 d.26.1.1 71907 1fd9A 213 61.46 d.26.1.1 59771 1y1oA 203 62.75 c.52.1.28 116345 1sv6A 269 62.99 d.177.1.1 106043 2cdpA 160 63.22 1m1sA 116 64.42 b.1.11.2 84747 2pthA 193 64.71 c.56.3.1 33793 1wjnA 97 64.93 d.15.1.1 114703 1k12A 158 65.01 b.18.1.15 71978 1mv3A 213 65.47 b.34.2.1 91468 1vqoA 240 66.16 b.34.5.3,b.40.4.5 120361,120362 2elaA 175 66.16 1xneA 113 70.36 b.122.1.6 115579 2dbnA 461 71.15 2rc5A 314 71.18 1fmtA 314 73.52 b.46.1.1,c.65.1.1 25758,34174 3bdwA 123 74.07 1kxlA 199 74.81 b.40.4.3 73155 2hazA 105 75.32 b.1.2.1 136303 2qdyB 212 76.04 2i46A 161 77.01 2pu9B 74 79.37 2c4xA 260 79.59 1fr3A 67 79.75 b.40.6.1 25436 1go3E 187 80.47 b.40.4.5,d.230.1.1 83054,83055 2yueA 168 80.55 2j21A 219 85.23 1h9mA 145 85.40 b.40.6.2,b.40.6.2 60833,60834 2eb4A 267 86.21 2z1cA 75 86.98 1hyoA 421 88.58 b.34.8.1,d.177.1.1 59001,59002 2iwkA 642 88.63 2qfjA 216 88.79 2hbwA 235 88.93 1wv3A 238 89.95 b.26.1.4,b.26.1.4 121318,121319