Best Alignments for T0429

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1em2A	3.0322e+01	1em2A/T0429-1em2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.129.3.2
1mhnA	3.9591e+01	1mhnA/T0429-1mhnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.9.1
1pfbA	4.9455e+01	1pfbA/T0429-1pfbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.2
1q3lA	5.0413e+01	1q3lA/T0429-1q3lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.2
2qqrA	5.8407e+01	2qqrA/T0429-2qqrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1gvhA	5.9275e+01	1gvhA/T0429-1gvhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.1.1.2 b.43.4.2 c.25.1.5
1xu1R	6.4013e+01	1xu1R/T0429-1xu1R-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.24.1.2
1s96A	7.0350e+01	1s96A/T0429-1s96A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.1
2fmmA	7.0362e+01	2fmmA/T0429-2fmmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.2
1ckxA	7.4051e+01	1ckxA/T0429-1ckxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wgsA	7.5645e+01	1wgsA/T0429-1wgsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.3
1ok0A	7.7091e+01	1ok0A/T0429-1ok0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.5.1.1
2rkqA	7.8011e+01	2rkqA/T0429-2rkqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2hxwA	7.8242e+01	2hxwA/T0429-2hxwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vk1A	8.0765e+01	1vk1A/T0429-1vk1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.268.1.2
1g5vA	8.2668e+01	1g5vA/T0429-1g5vA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.9.1
1pdqA	8.4981e+01	1pdqA/T0429-1pdqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.2
1ohtA	8.5055e+01	1ohtA/T0429-1ohtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.118.1.1
2j5aA	8.5719e+01	2j5aA/T0429-2j5aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1q46A	8.7205e+01	1q46A/T0429-1q46A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.60.14.1 b.40.4.5

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001