# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mhnA	59	1.187	b.34.9.1	84964
1g5vA	88	2.639	b.34.9.1	60292
2rh7A	239	5.176		
2j5aA	110	6.566		
2fhdA	153	10.04		
2av9A	147	13.00	d.38.1.1	127365
1danT	80	13.97	b.1.2.1	21953
1zc1A	208	15.17		
2psoA	237	15.44		
1ris	101	21.06		
1vqoA	240	21.39	b.34.5.3,b.40.4.5	120361,120362
1lcyA	325	24.10	b.36.1.4,b.47.1.1	73834,73835
1kypA	237	26.76	d.22.1.1	73280
1jdpA	441	27.00	c.93.1.1	62906
1x24A	180	28.09		
1louA	101	28.18	d.58.14.1	39323
2p0pA	126	28.63		
1wgsA	133	30.97	b.34.13.3	114622
2gw4B	162	31.11		
1wi5A	119	33.66	b.40.4.5	114661
2eqkA	85	34.97		
1h6rA	236	36.61	d.22.1.1	65683
1l1jA	239	40.54	b.47.1.1	84516
1oxdA	227	41.43	d.22.1.1	93687
1vqoK	132	42.39	b.39.1.1	120372
1b9cA	236	42.54	d.22.1.1	38358
1lba	146	42.75		
1ypfA	336	43.62		
1jg1A	235	45.23	c.66.1.7	66661
1uisA	231	46.81	d.22.1.1	99431
2fiwA	172	49.82	d.108.1.1	133539
1dz1A	70	51.17	b.34.13.2	37473
2a90A	240	51.52		
1fnoA	417	52.17	d.58.19.1,c.56.5.4	70145,75841
2gfaA	119	55.75	b.34.9.1,b.34.9.1	135089,135090
1n7oA	721	57.57	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
1g8kA	825	57.67	b.52.2.2,c.81.1.1	26920,35328
2qjlA	99	59.85		
1ecxA	384	63.73	c.67.1.3	34431
2opkA	112	63.83		
2eryA	172	65.72	c.37.1.8	132306
1xu1R	42	65.84	g.24.1.2	116036
2hc8A	113	67.54		
1b8oA	284	70.58	c.56.2.1	33762
2q83A	346	73.20		
1q3lA	69	75.68	b.34.13.2	111652
2qqrA	118	75.80		
2h21A	440	79.55	a.166.1.1,b.85.7.3	135976,135977
1s6yA	450	80.86	c.2.1.5,d.162.1.2	105314,105315
1pfbA	55	83.60	b.34.13.2	94655
1h30A	422	89.60	b.29.1.4,b.29.1.4	76604,76605