# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mhnA	59	1.897	b.34.9.1	84964
1g5vA	88	5.084	b.34.9.1	60292
2j5aA	110	8.103		
2rh7A	239	8.999		
2av9A	147	9.255	d.38.1.1	127365
1danT	80	9.310	b.1.2.1	21953
1zc1A	208	10.79		
2fhdA	153	16.27		
1vqoK	132	17.31	b.39.1.1	120372
1h30A	422	21.03	b.29.1.4,b.29.1.4	76604,76605
1ris	101	21.95		
2psoA	237	23.91		
1vqoA	240	24.46	b.34.5.3,b.40.4.5	120361,120362
1louA	101	27.35	d.58.14.1	39323
1x24A	180	27.84		
1lcyA	325	30.04	b.36.1.4,b.47.1.1	73834,73835
2eqkA	85	30.33		
1ecxA	384	30.59	c.67.1.3	34431
2gw4B	162	30.80		
2hft	218	36.33		
1wi5A	119	37.55	b.40.4.5	114661
1jdpA	441	37.57	c.93.1.1	62906
1fnoA	417	38.14	d.58.19.1,c.56.5.4	70145,75841
1b9cA	236	41.40	d.22.1.1	38358
2q83A	346	41.69		
2btlA	134	44.41	b.148.1.1	129154
1te0A	318	44.88	b.36.1.4,b.47.1.1	112400,112401
1s6yA	450	45.76	c.2.1.5,d.162.1.2	105314,105315
1y8tA	324	46.07	b.36.1.4,b.47.1.1	122763,122764
1kypA	237	49.09	d.22.1.1	73280
1oxdA	227	51.27	d.22.1.1	93687
1dz1A	70	53.35	b.34.13.2	37473
2fiwA	172	54.81	d.108.1.1	133539
1h6rA	236	55.19	d.22.1.1	65683
2a90A	240	58.48		
1uisA	231	60.35	d.22.1.1	99431
2r55A	231	63.91		
1ypfA	336	65.77		
2p0pA	126	66.35		
2pn0A	141	67.60		
1wgsA	133	67.67	b.34.13.3	114622
1s96A	219	71.67	c.37.1.1	98740
1bhe	376	72.67		
1l1jA	239	73.12	b.47.1.1	84516
1ghpA	258	75.40	e.3.1.1	60520
1jj2A	239	76.89	b.34.5.3,b.40.4.5	63084,63085
1fdrA	248	82.02	b.43.4.2,c.25.1.1	25653,31543
2eryA	172	84.97	c.37.1.8	132306
2rflA	173	85.29		
1danU	121	89.23	b.1.2.1	21954
1q3lA	69	89.76	b.34.13.2	111652