Best Alignments for T0429

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1em2A	2.8957e+01	1em2A/T0429-1em2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.129.3.2
1s96A	3.0094e+01	1s96A/T0429-1s96A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.1
2hxwA	3.3679e+01	2hxwA/T0429-2hxwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1q3lA	4.1351e+01	1q3lA/T0429-1q3lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.2
1pfbA	4.2868e+01	1pfbA/T0429-1pfbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.2
1gvhA	4.4648e+01	1gvhA/T0429-1gvhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.1.1.2 b.43.4.2 c.25.1.5
2qqrA	4.5629e+01	2qqrA/T0429-2qqrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vk1A	4.6574e+01	1vk1A/T0429-1vk1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.268.1.2
1krhA	4.7639e+01	1krhA/T0429-1krhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.43.4.2 c.25.1.2 d.15.4.2
2fmmA	4.8921e+01	2fmmA/T0429-2fmmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.2
1xu1R	5.3317e+01	1xu1R/T0429-1xu1R-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.24.1.2
2rkqA	5.3555e+01	2rkqA/T0429-2rkqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2an9A	5.4342e+01	2an9A/T0429-2an9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.1
1q5yA	5.7871e+01	1q5yA/T0429-1q5yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.58.18.4
2bemA	6.4526e+01	2bemA/T0429-2bemA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.1.18.2
1ok0A	6.5638e+01	1ok0A/T0429-1ok0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.5.1.1
1l5wA	6.8926e+01	1l5wA/T0429-1l5wA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.87.1.4
2j5aA	7.1752e+01	2j5aA/T0429-2j5aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2eaxA	7.3991e+01	2eaxA/T0429-2eaxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1gx5A	8.0569e+01	1gx5A/T0429-1gx5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	e.8.1.4

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001