# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1wguA	136	25.66	b.55.1.2	114623
2bemA	170	28.73	b.1.18.2	116698
2fmmA	74	30.19	b.34.13.2	133782
2dyqA	144	33.39		
1s96A	219	38.11	c.37.1.1	98740
2cwpA	112	40.32		
1uj8A	77	43.14	a.159.5.1	119683
2b2yA	187	48.19	b.34.13.2,b.34.13.2	127754,127755
1pfbA	55	49.68	b.34.13.2	94655
2bkdN	134	49.80		
2an9A	207	54.14	c.37.1.1	127037
1wi5A	119	57.96	b.40.4.5	114661
1q3lA	69	61.13	b.34.13.2	111652
1xcbA	211	62.95	a.4.5.38,c.2.1.12	109552,109553
2oodA	475	63.65		
1q5yA	85	67.31	d.58.18.4	95950
2a4vA	159	68.24	c.47.1.10	126163
2hxwA	237	68.95		
1fuiA	591	70.02	b.43.2.1,c.85.1.1	25674,35444
2hbwA	235	70.56		
2evrA	246	72.68	b.34.11.3,d.3.1.16	132440,132441
1xu1R	42	78.06	g.24.1.2	116036
2nr3A	183	80.07		
2h1eA	177	84.64		
1g2oA	268	84.76	c.56.2.1	60228
3bjeA	349	87.08		
2qqrA	118	87.30		
1obfO	335	87.68	c.2.1.3,d.81.1.1	86768,86769