# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	6.332	d.129.3.2	41321
2hxwA	237	8.091		
1gvhA	396	9.767	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1s96A	219	10.52	c.37.1.1	98740
1krhA	338	11.74	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1vk1A	242	13.06	d.268.1.2	108634
1q3lA	69	16.07	b.34.13.2	111652
2rkqA	169	16.53		
2j5aA	110	16.73		
1l5wA	796	16.98	c.87.1.4	73605
2eaxA	164	18.04		
1ohtA	215	18.81	d.118.1.1	87036
1pfbA	55	20.42	b.34.13.2	94655
2an9A	207	21.62	c.37.1.1	127037
1xu1R	42	28.02	g.24.1.2	116036
2fmmA	74	35.74	b.34.13.2	133782
1fdr	248	35.83		
1ok0A	74	36.80	b.5.1.1	93191
2bsxA	253	38.60	c.56.2.1	129128
1gx5A	536	39.25	e.8.1.4	70682
1xmtA	103	40.07	d.108.1.1	115561
2qqrA	118	40.20		
2asuB	234	40.64		
1sqwA	188	41.52	b.122.1.1,d.17.6.3	119033,119034
2vqeQ	105	42.37		
1am2A	199	43.25	b.86.1.2	28381
2f3nA	76	43.59	a.60.1.2	132885
1a8pA	258	45.19	b.43.4.2,c.25.1.1	25654,31544
1tcvA	287	45.33		
1fdrA	248	49.43	b.43.4.2,c.25.1.1	25653,31543
2bgiA	272	50.35		
3bjeA	349	50.96		
2dyqA	144	51.03		
2opkA	112	52.24		
2hc8A	113	57.01		
1ju2A	536	57.32	c.3.1.2,d.16.1.1	77169,77170
1sk4A	163	58.36	d.118.1.1	105664
1q5yA	85	58.62	d.58.18.4	95950
2eavA	165	60.47		
2h8gA	267	60.58		
2c2uA	207	61.12		
2bemA	170	61.87	b.1.18.2	116698
1accA	735	62.61	f.11.1.1	43828
1cqmA	101	64.38	d.58.14.1	39321
1twfB	1224	66.65	e.29.1.1	112726
2evrA	246	68.28	b.34.11.3,d.3.1.16	132440,132441
2c71A	216	69.42	c.6.2.3	130017
1vmaA	306	70.91	a.24.13.1,c.37.1.10	108887,108888
2oh5A	248	72.05		
2qdxA	257	72.77		
1qqp2	218	73.21		
2r55A	231	75.58		
1qfjA	232	76.04	b.43.4.2,c.25.1.1	25655,31545
2f69A	261	79.04	b.76.2.1,b.85.7.1	133035,133036
2gt1A	326	80.53		
2ok8A	316	80.90		
1k5nB	100	81.99	b.1.1.2	77268
1s12A	94	85.53	d.64.2.1	112003
2csgA	424	85.85	b.82.2.12	130768
1vqoA	240	86.93	b.34.5.3,b.40.4.5	120361,120362
1b8oA	284	89.79	c.56.2.1	33762