# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	3.135	d.129.3.2	41321
1s96A	219	9.493	c.37.1.1	98740
2hxwA	237	19.51		
1xu1R	42	19.73	g.24.1.2	116036
1vk1A	242	20.57	d.268.1.2	108634
1vkcA	158	21.32	d.108.1.1	113663
1gvhA	396	23.45	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1l5wA	796	24.76	c.87.1.4	73605
1krhA	338	26.72	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
2an9A	207	27.44	c.37.1.1	127037
1pfbA	55	30.78	b.34.13.2	94655
1v0aA	178	40.79	b.18.1.30	119815
2qqrA	118	40.93		
1ju2A	536	41.09	c.3.1.2,d.16.1.1	77169,77170
2oh5A	248	41.25		
2c71A	216	41.44	c.6.2.3	130017
2f3nA	76	42.22	a.60.1.2	132885
1vqoA	240	42.58	b.34.5.3,b.40.4.5	120361,120362
1ok0A	74	45.99	b.5.1.1	93191
1am2A	199	46.36	b.86.1.2	28381
2j5aA	110	46.92		
3bs2A	148	47.16		
1q3lA	69	47.65	b.34.13.2	111652
1gx5A	536	49.62	e.8.1.4	70682
1twfB	1224	50.16	e.29.1.1	112726
1q5yA	85	51.33	d.58.18.4	95950
1lshA	1056	51.60	a.118.4.1,f.7.1.1,f.7.1.1	74242,74243,74244
2f69A	261	53.48	b.76.2.1,b.85.7.1	133035,133036
2fmmA	74	54.20	b.34.13.2	133782
1tcvA	287	54.44		
2bsxA	253	56.62	c.56.2.1	129128
2asuB	234	57.05		
3bjeA	349	57.71		
2jm1A	141	57.94		
2vqeQ	105	60.20		
2rkqA	169	60.60		
2opkA	112	61.18		
2ok8A	316	61.54		
1kthA	58	64.38	g.8.1.1	68863
2j41A	207	64.74		
1fdr	248	64.76		
2hc8A	113	68.39		
1n6aA	259	68.93	b.76.2.1,b.85.7.1	80121,80122
2gt1A	326	69.29		
1gx3A	284	72.36	d.3.1.5	70678
1a8pA	258	72.84	b.43.4.2,c.25.1.1	25654,31544
3c5tA	122	73.11		
1fcyA	236	75.50	a.123.1.1	19282
2bemA	170	76.55	b.1.18.2	116698
1k5nB	100	78.47	b.1.1.2	77268
1fdrA	248	78.83	b.43.4.2,c.25.1.1	25653,31543
2c2uA	207	79.24		
2dh2A	424	79.33		
1w7cA	747	79.42		
2jg1A	330	79.60		
2evrA	246	80.05	b.34.11.3,d.3.1.16	132440,132441
2r55A	231	80.87		
1sqwA	188	82.48	b.122.1.1,d.17.6.3	119033,119034
2e3nA	255	84.22		
1qfjA	232	84.58	b.43.4.2,c.25.1.1	25655,31545
2eaxA	164	85.17		
2bgiA	272	85.68		
2csgA	424	85.76	b.82.2.12	130768
2p2sA	336	89.96