# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	2.066	d.129.3.2	41321
2f2lX	167	6.396	d.118.1.1	132844
1gvhA	396	10.12	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1pdqA	72	13.06	b.34.13.2	94590
1avqA	228	15.58	c.52.1.13	33326
1louA	101	17.52	d.58.14.1	39323
1r7aA	504	18.62	b.71.1.1,c.1.8.1	97192,97193
1ohtA	215	20.03	d.118.1.1	87036
1pfbA	55	21.74	b.34.13.2	94655
2h8gA	267	21.88		
1ok0A	74	27.25	b.5.1.1	93191
1hoe	74	29.20		
2ouxA	286	29.89		
1vqoK	132	31.39	b.39.1.1	120372
1sxrA	183	32.35	d.118.1.1	106101
1xu1R	42	32.48	g.24.1.2	116036
1mhnA	59	33.10	b.34.9.1	84964
1b8oA	284	34.48	c.56.2.1	33762
3chvA	284	36.92		
2b2yA	187	39.68	b.34.13.2,b.34.13.2	127754,127755
1qstA	160	41.68	d.108.1.1	40804
2opkA	112	45.01		
2oasA	436	45.62		
2qqrA	118	46.55		
1cqmA	101	46.85	d.58.14.1	39321
1q3lA	69	47.99	b.34.13.2	111652
2rkqA	169	49.14		
2fmmA	74	49.79	b.34.13.2	133782
3bh0A	315	52.75		
2arcA	164	53.56	b.82.4.1	28148
1fdr	248	56.47		
2aqpA	164	57.12		
2f2lA	167	57.80	d.118.1.1	132843
1ou8A	111	57.84	b.136.1.1	93543
1z9nA	177	59.90		
1vk1A	242	62.94	d.268.1.2	108634
1ypxA	375	63.88		
2yvyA	278	63.96		
1wznA	252	64.59	c.66.1.43	121525
1vqoA	240	65.73	b.34.5.3,b.40.4.5	120361,120362
1edgA	380	69.00	c.1.8.3	28807
1a8pA	258	69.95	b.43.4.2,c.25.1.1	25654,31544
1sk4A	163	70.91	d.118.1.1	105664
1dl2A	511	71.22	a.102.2.1	18844
1tib	269	72.99		
1zc1A	208	76.56		
2qdxA	257	78.09		
3b34A	891	78.16		
1bco	327	78.41		
1danU	121	82.78	b.1.2.1	21954
1yfnA	118	86.45	b.136.1.1	123080
2gfgA	193	88.50