# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	2.628	d.129.3.2	41321
1r7aA	504	6.996	b.71.1.1,c.1.8.1	97192,97193
1avqA	228	11.41	c.52.1.13	33326
2f2lX	167	19.85	d.118.1.1	132844
1louA	101	20.35	d.58.14.1	39323
1gvhA	396	21.27	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2ouxA	286	22.88		
1pdqA	72	23.15	b.34.13.2	94590
1pfbA	55	23.75	b.34.13.2	94655
1hoe	74	23.89		
2yvyA	278	24.71		
1ok0A	74	25.15	b.5.1.1	93191
3bh0A	315	25.72		
1xu1R	42	27.89	g.24.1.2	116036
2h8gA	267	28.13		
1ohtA	215	28.94	d.118.1.1	87036
3chvA	284	33.08		
1cqmA	101	36.63	d.58.14.1	39321
1edgA	380	40.46	c.1.8.3	28807
1vqoK	132	43.98	b.39.1.1	120372
1b8oA	284	47.17	c.56.2.1	33762
2rkqA	169	47.83		
1ou8A	111	51.61	b.136.1.1	93543
1vk1A	242	54.20	d.268.1.2	108634
2gfgA	193	55.20		
1q3lA	69	58.89	b.34.13.2	111652
1vqoE	178	59.04	d.141.1.1,d.141.1.1	120366,120367
2opkA	112	59.22		
1x3qA	57	60.01	b.34.13.2	121669
1yfnA	118	60.46	b.136.1.1	123080
1lba	146	61.91		
2e3nA	255	62.53		
1sxrA	183	64.55	d.118.1.1	106101
1vqoA	240	66.50	b.34.5.3,b.40.4.5	120361,120362
2gduA	504	67.31	b.71.1.1,c.1.8.1	135032,135033
2vqeQ	105	69.67		
1mhnA	59	73.84	b.34.9.1	84964
2arcA	164	75.03	b.82.4.1	28148
2e6xA	69	79.63		
2fmmA	74	79.95	b.34.13.2	133782
1jj2E	177	80.49	d.141.1.1,d.141.1.1	63089,63090
2aqpA	164	85.39		
2qqrA	118	87.26		
2psoA	237	87.87		
1rl2A	137	88.70	b.34.5.3,b.40.4.5	24610,25342
3besR	250	88.83