# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3b9tA 484 4.475 1mi8A 158 4.814 b.86.1.2 91279 1l1jA 239 5.279 b.47.1.1 84516 2bemA 170 5.649 b.1.18.2 116698 1yvcA 70 6.025 b.40.4.12 124094 2cwpA 112 7.872 1am2A 199 8.183 b.86.1.2 28381 2f4eA 180 8.618 1sawA 225 8.925 d.177.1.1 112050 1y0bA 197 9.555 c.61.1.1 122476 2oqkA 117 10.22 1kl9A 182 10.82 a.60.14.1,b.40.4.5 111574,111575 1kzlA 208 12.18 b.43.4.3,b.43.4.3 77635,77636 2bkdN 134 14.16 1ylnA 252 15.92 b.45.2.1,b.45.2.2 123657,123658 2hqxA 246 17.33 b.34.9.1 136675 2a28A 54 17.70 1am2 199 18.95 1fd9A 213 19.53 d.26.1.1 59771 2fhdA 153 19.98 1q46A 175 20.90 a.60.14.1,b.40.4.5 111594,111595 2pn8A 211 23.04 2ii1A 301 23.95 1wfyA 104 27.43 d.15.1.5 114597 2ak5A 64 28.41 1yezA 68 31.84 b.40.4.12 123026 1bco 327 33.34 1r9hA 135 33.57 d.26.1.1 97260 1y8tA 324 34.55 b.36.1.4,b.47.1.1 122763,122764 1lcyA 325 35.86 b.36.1.4,b.47.1.1 73834,73835 1xvqA 175 35.89 c.47.1.10 116094 2bz8A 58 36.92 1at0 145 37.23 2ixeA 271 38.17 1jvwA 167 38.84 d.26.1.1 71907 1ghj 79 41.01 1bdoA 80 41.82 b.84.1.1 28214 2dbnA 461 41.89 2r39A 118 42.36 2drmA 58 42.41 3c0cA 73 43.96 1a0nB 69 44.48 b.34.2.1 24469 1q6uA 245 44.65 d.26.1.1 95998 1sotA 320 44.69 b.36.1.4,b.47.1.1 105852,105853 1oebA 62 45.16 b.34.2.1 86909 2ar1A 172 47.09 b.122.1.8 127187 1i8dA 213 47.90 b.43.4.3,b.43.4.3 61953,61954 1shfA 59 47.98 b.34.2.1 24462 1d7qA 143 48.31 b.40.4.5 25331 2rdeA 251 48.69 2q18X 293 48.81 2f8mA 244 49.01 1at0A 145 49.04 b.86.1.1 28374 2fmmA 74 50.71 b.34.13.2 133782 2o31A 67 50.80 1fl0A 171 50.98 b.40.4.4 25315 1bb9A 115 51.12 b.34.2.1 24554 1pdqA 72 51.82 b.34.13.2 94590 2ho9A 167 52.43 2awgA 118 53.90 2qlcA 126 54.51 2o88A 58 55.72 1u06A 62 56.12 b.34.2.1 119404 1wzoA 246 58.10 1bdo 80 58.43 1bcoA 327 58.84 b.48.1.1,c.55.3.3 26431,33676 2j6fA 62 59.44 2b7kA 200 59.96 c.47.1.10 128042 1ckaA 57 60.34 b.34.2.1 24459 1sgpE 185 60.52 b.47.1.1 25816 1te0A 318 60.90 b.36.1.4,b.47.1.1 112400,112401 1semA 58 63.37 b.34.2.1 24544 2raaA 204 64.44 1rl2A 137 64.53 b.34.5.3,b.40.4.5 24610,25342 1q3lA 69 65.40 b.34.13.2 111652 1nkqA 259 67.08 d.177.1.1 103862 1utiA 58 67.28 b.34.2.1 99962 2f5kA 102 67.52 b.34.13.3 132995 2a19A 175 67.71 1a49A 530 68.32 b.58.1.1,c.1.12.1,c.49.1.1 27026,29255,33109 2pfuA 99 68.39 1bbzA 58 68.75 b.34.2.1 24477 2o9sA 67 69.70 2yvpA 182 73.33 2e29A 92 75.14 1kngA 156 76.43 c.47.1.10 72777 1ywuA 149 77.51 b.45.2.1 124164 1uj0A 62 78.31 b.34.2.1 99449 1lk5A 229 78.51 c.124.1.4,d.58.40.1 73960,73961 2yyoA 171 80.97 1mv3A 213 81.16 b.34.2.1 91468 2pu9B 74 81.41 1yn8A 59 82.30 1khcA 147 84.51 b.34.9.2 68608 2eveA 157 84.95 b.122.1.8 132427 2g3rA 123 85.16 b.34.9.1,b.34.9.1 134570,134571 2cvbA 188 85.84 c.47.1.10 130859 2g82A 331 86.31 c.2.1.3,d.81.1.1 134746,134747 1yn4A 99 86.39 1nxzA 246 88.92 b.122.1.2,c.116.1.5 86391,86392 1gcqC 70 88.95 b.34.2.1 60436 1y9zA 441 89.48