Best Alignments for T0429

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2qqrA	3.7469e+01	2qqrA/T0429-2qqrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1em2A	3.8232e+01	1em2A/T0429-1em2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.129.3.2
1mhnA	3.9079e+01	1mhnA/T0429-1mhnA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.9.1
1q3lA	4.5067e+01	1q3lA/T0429-1q3lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.2
1pfbA	5.3631e+01	1pfbA/T0429-1pfbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.2
1s96A	5.5280e+01	1s96A/T0429-1s96A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.1
1xu1R	6.4873e+01	1xu1R/T0429-1xu1R-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.24.1.2
1ok0A	6.7452e+01	1ok0A/T0429-1ok0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.5.1.1
1gvhA	6.8848e+01	1gvhA/T0429-1gvhA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.1.1.2 b.43.4.2 c.25.1.5
2bemA	7.4012e+01	2bemA/T0429-2bemA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.1.18.2
1ckxA	7.6751e+01	1ckxA/T0429-1ckxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wgsA	7.7743e+01	1wgsA/T0429-1wgsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.3
2fmmA	7.8792e+01	2fmmA/T0429-2fmmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.13.2
2j5aA	8.0624e+01	2j5aA/T0429-2j5aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2an9A	8.1947e+01	2an9A/T0429-2an9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.37.1.1
1vk1A	8.2531e+01	1vk1A/T0429-1vk1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.268.1.2
2hxwA	8.5242e+01	2hxwA/T0429-2hxwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vqoA	8.7502e+01	1vqoA/T0429-1vqoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.5.3 b.40.4.5
2rkqA	8.8552e+01	2rkqA/T0429-2rkqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1gx5A	8.9236e+01	1gx5A/T0429-1gx5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	e.8.1.4

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001