# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mhnA	59	1.647	b.34.9.1	84964
1g5vA	88	4.205	b.34.9.1	60292
1zc1A	208	5.332		
2fhdA	153	8.184		
2j5aA	110	9.007		
2eryA	172	11.94	c.37.1.8	132306
1ris	101	14.71		
2av9A	147	15.21	d.38.1.1	127365
1vqoA	240	17.69	b.34.5.3,b.40.4.5	120361,120362
1louA	101	19.46	d.58.14.1	39323
1danT	80	20.48	b.1.2.1	21953
1ecxA	384	22.76	c.67.1.3	34431
1dz1A	70	25.21	b.34.13.2	37473
1o6gA	710	29.42	b.69.7.1,c.69.1.4	81087,81088
2a25A	193	30.95		
1jfxA	217	31.29	c.1.8.8	62943
2eqkA	85	32.42		
1jj2A	239	32.52	b.34.5.3,b.40.4.5	63084,63085
3cz8A	319	37.62		
1x24A	180	42.90		
1vqoK	132	44.54	b.39.1.1	120372
2psoA	237	45.03		
1qfmA	710	48.39	b.69.7.1,c.69.1.4	27673,34641
1q3lA	69	50.34	b.34.13.2	111652
1xcbA	211	51.09	a.4.5.38,c.2.1.12	109552,109553
1s6yA	450	53.11	c.2.1.5,d.162.1.2	105314,105315
2b2yA	187	55.67	b.34.13.2,b.34.13.2	127754,127755
2gfaA	119	56.49	b.34.9.1,b.34.9.1	135089,135090
1lba	146	56.98		
1kmkA	406	62.22	c.67.1.3	68696
1ypfA	336	62.85		
1y8tA	324	63.07	b.36.1.4,b.47.1.1	122763,122764
1eg5A	384	64.25	c.67.1.3	34429
1g6zA	70	64.53	b.34.13.2	60321
2huhA	147	65.33		
1te0A	318	67.81	b.36.1.4,b.47.1.1	112400,112401
1wgsA	133	68.24	b.34.13.3	114622
8abpA	306	75.01	c.93.1.1	35647
2q83A	346	77.94		
2qqrA	118	78.31		
2opkA	112	78.34		
1jdpA	441	78.92	c.93.1.1	62906
2p3yA	491	84.14		
1danU	121	84.89	b.1.2.1	21954
1zd9A	188	86.08	c.37.1.8	124938
2fmmA	74	86.23	b.34.13.2	133782
3bbjA	272	87.15		
1s96A	219	87.71	c.37.1.1	98740
1j8rA	196	89.43	b.2.3.3	62745