# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mhnA	59	2.810	b.34.9.1	84964
2j5aA	110	4.629		
1g5vA	88	7.371	b.34.9.1	60292
2eryA	172	7.979	c.37.1.8	132306
2fhdA	153	8.744		
1ris	101	11.22		
1louA	101	13.17	d.58.14.1	39323
1danT	80	13.62	b.1.2.1	21953
2rh7A	239	16.38		
1zc1A	208	16.73		
2psoA	237	19.56		
1vqoA	240	20.51	b.34.5.3,b.40.4.5	120361,120362
1n7oA	721	22.94	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
2av9A	147	23.87	d.38.1.1	127365
1ecxA	384	26.52	c.67.1.3	34431
1o6gA	710	26.52	b.69.7.1,c.69.1.4	81087,81088
1y8tA	324	29.52	b.36.1.4,b.47.1.1	122763,122764
1x24A	180	37.17		
1b9cA	236	38.35	d.22.1.1	38358
1uisA	231	39.12	d.22.1.1	99431
1eg5A	384	40.20	c.67.1.3	34429
1jdpA	441	40.56	c.93.1.1	62906
2a25A	193	40.99		
2pn0A	141	41.25		
1te0A	318	42.07	b.36.1.4,b.47.1.1	112400,112401
1h6rA	236	43.47	d.22.1.1	65683
1jfxA	217	44.56	c.1.8.8	62943
1dz1A	70	45.71	b.34.13.2	37473
1oxdA	227	50.12	d.22.1.1	93687
2eqkA	85	51.94		
1kypA	237	53.06	d.22.1.1	73280
1x1iA	752	54.10	a.102.3.2,b.24.1.1,b.30.5.2	121584,121585,121586
1jj2A	239	54.25	b.34.5.3,b.40.4.5	63084,63085
2qqrA	118	55.02		
2hufA	393	56.61		
1vqoK	132	57.05	b.39.1.1	120372
2gfaA	119	59.02	b.34.9.1,b.34.9.1	135089,135090
1jg1A	235	61.68	c.66.1.7	66661
1jdiA	231	63.65	c.74.1.1	66551
1q3lA	69	63.98	b.34.13.2	111652
1kbvA	327	64.59	b.6.1.3,b.6.1.3	68395,68396
2p3yA	491	65.31		
2q83A	346	67.23		
2r55A	231	67.26		
1lba	146	71.52		
1xcbA	211	71.74	a.4.5.38,c.2.1.12	109552,109553
1k0wA	231	73.29	c.74.1.1	77220
1x3qA	57	73.36	b.34.13.2	121669
1kk1A	410	74.14	b.43.3.1,b.44.1.1,c.37.1.8	72634,72635,72636
1wgxA	73	77.16	a.4.1.3	114626
1l1jA	239	77.80	b.47.1.1	84516
1s6yA	450	79.18	c.2.1.5,d.162.1.2	105314,105315
2hft	218	79.96		
2rk9A	145	82.10		
2a90A	240	82.86		
1vqoQ	96	83.39	b.34.5.1	120378
8abpA	306	83.74	c.93.1.1	35647
2opkA	112	84.33		
1y6kR	214	85.33	b.1.2.1,b.1.2.1	122663,122664
2rflA	173	85.55		
1lcyA	325	87.51	b.36.1.4,b.47.1.1	73834,73835
1wi5A	119	89.31	b.40.4.5	114661