# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qmqA 286 4.507 1i8aA 189 6.044 b.1.9.2 61951 1g5vA 88 8.775 b.34.9.1 60292 1hjxA 362 8.842 c.1.8.5,d.26.3.1 83512,83513 1mhnA 59 9.486 b.34.9.1 84964 2reeA 224 11.34 2hpuA 175 12.06 1lrzA 426 15.02 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1s96A 219 17.37 c.37.1.1 98740 2psoA 237 18.60 1lg2A 365 18.74 c.1.8.5,d.26.3.1 77950,77951 2eqkA 85 19.89 1ky9A 448 20.93 b.36.1.4,b.47.1.1 73198,73199 1se8A 301 21.15 b.40.4.3 105448 3cz8A 319 21.70 2hx1A 284 22.46 1czaN 917 23.50 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 1ct9A 553 24.35 c.26.2.1,d.153.1.1 31616,41834 1v4sA 455 25.14 c.55.1.3,c.55.1.3 100309,100310 1zc1A 208 26.71 1cjaA 342 27.98 d.144.1.3 41708 1sat 471 28.15 3buuA 229 29.04 1sc6A 404 29.34 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1kbvA 327 30.50 b.6.1.3,b.6.1.3 68395,68396 1lba 146 31.91 1kypA 237 32.82 d.22.1.1 73280 1gw1A 376 33.47 c.1.8.3 76361 1ji1A 637 33.55 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 2q83A 346 34.71 1danT 80 34.91 b.1.2.1 21953 1ris 101 35.13 1miqA 375 36.48 b.50.1.2 79151 1hkkA 364 37.32 c.1.8.5,d.26.3.1 90634,90635 2fhdA 153 37.51 2h2tB 175 38.28 2hkdA 320 38.55 1sotA 320 38.57 b.36.1.4,b.47.1.1 105852,105853 1q1uA 144 38.75 b.42.1.1 95608 1f15B 218 39.29 b.121.4.5 23321 2dkhA 639 40.41 1i82A 189 41.20 b.1.9.2 61937 2evrA 246 41.80 b.34.11.3,d.3.1.16 132440,132441 1g8aA 227 44.34 c.66.1.3 90506 2a1fA 247 45.22 c.73.1.3 125991 2hbwA 235 46.51 1v5vA 401 47.13 b.44.2.1,d.250.1.1 113539,113540 3bs4A 260 47.76 1louA 101 48.11 d.58.14.1 39323 1vb5A 276 49.72 c.124.1.5 113604 2an9A 207 50.11 c.37.1.1 127037 1wb0A 445 51.00 c.1.8.5,d.26.3.1 120825,120826 2cclA 158 51.24 b.2.2.2 130248 1h09A 338 51.86 b.109.1.1,c.1.8.8 83420,83421 2g8cO 251 51.89 1zxmA 400 52.28 2a6vA 226 52.53 b.29.1.13 126312 1ecxA 384 52.74 c.67.1.3 34431 2cfmA 561 53.69 3b3qE 197 53.69 1akyA 220 54.55 c.37.1.1,g.41.2.1 31896,45197 2rh7A 239 55.13 1qhoA 686 57.87 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1x0hA 112 59.44 d.332.1.1 121547 1hdiA 413 59.57 c.86.1.1 60964 1ji2A 585 59.81 b.1.18.2,b.71.1.1,c.1.8.1 71672,71673,71674 2qkpA 151 60.31 1od2A 805 61.64 c.14.1.4,c.14.1.4 86821,86822 1uh4A 637 62.95 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 2rb7A 364 65.32 1crwG 333 66.04 c.2.1.3,d.81.1.1 30026,39941 1t3cA 421 66.31 d.92.1.7 106343 2gw4B 162 68.35 2bkhA 814 69.83 1x24A 180 72.11 1danU 121 72.26 b.1.2.1 21954 1q3lA 69 73.08 b.34.13.2 111652 3bwxA 285 74.60 1ub4A 110 74.77 b.34.6.2 88399 1dgkN 917 76.41 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33487,33488,33489,33490 1k8tA 510 76.72 e.41.1.1 68316 2qv2A 342 76.73 1c8gA 548 78.20 b.121.5.2 23380 1v33A 366 78.45 d.264.1.1 100278 2hqxA 246 78.49 b.34.9.1 136675 2cas 548 79.61 1li5A 461 80.01 a.27.1.1,c.26.1.1 73912,73913 1qjvA 342 81.08 b.80.1.5 28035 1y9uA 323 82.08 c.94.1.1 116594 2btlA 134 85.41 b.148.1.1 129154 2i5vO 251 85.48 2rieA 160 85.57 2q2gA 180 85.73 2eryA 172 86.33 c.37.1.8 132306 2qv8A 159 87.60 2j6lA 500 88.77 1ecfB 504 89.11 c.61.1.1,d.153.1.1 34054,41821 2h4aA 325 89.37 2hufA 393 89.81 1te5A 257 89.91 d.153.1.1 106795