# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1mhnA	59	1.959	b.34.9.1	84964
2j5aA	110	4.217		
1g5vA	88	5.263	b.34.9.1	60292
1zc1A	208	7.722		
2fhdA	153	9.392		
1danT	80	12.39	b.1.2.1	21953
2av9A	147	12.68	d.38.1.1	127365
1ris	101	14.21		
2psoA	237	16.81		
1louA	101	18.59	d.58.14.1	39323
2rh7A	239	21.08		
1kypA	237	22.27	d.22.1.1	73280
2eryA	172	22.52	c.37.1.8	132306
1jg1A	235	23.46	c.66.1.7	66661
1jdpA	441	24.54	c.93.1.1	62906
1vqoA	240	24.76	b.34.5.3,b.40.4.5	120361,120362
1n7oA	721	27.19	a.102.3.2,b.24.1.1,b.30.5.2	80259,80260,80261
2p0pA	126	28.42		
1h6rA	236	31.33	d.22.1.1	65683
1oxdA	227	34.90	d.22.1.1	93687
1uisA	231	35.33	d.22.1.1	99431
1ypfA	336	35.86		
2gfaA	119	37.71	b.34.9.1,b.34.9.1	135089,135090
1ecxA	384	38.96	c.67.1.3	34431
1b9cA	236	39.75	d.22.1.1	38358
1wgsA	133	40.12	b.34.13.3	114622
1wi5A	119	40.95	b.40.4.5	114661
2opkA	112	42.22		
2qqrA	118	42.37		
2eqkA	85	44.11		
1x1iA	752	44.93	a.102.3.2,b.24.1.1,b.30.5.2	121584,121585,121586
2fiwA	172	47.08	d.108.1.1	133539
2q83A	346	50.94		
1x24A	180	51.91		
1lcyA	325	53.04	b.36.1.4,b.47.1.1	73834,73835
2e6iA	64	56.09		
1g8kA	825	56.38	b.52.2.2,c.81.1.1	26920,35328
1xu1R	42	58.43	g.24.1.2	116036
1fnoA	417	58.48	d.58.19.1,c.56.5.4	70145,75841
2h21A	440	59.27	a.166.1.1,b.85.7.3	135976,135977
2hufA	393	63.09		
2rflA	173	64.60		
2a90A	240	66.10		
1dz1A	70	67.14	b.34.13.2	37473
1lba	146	69.25		
1wgxA	73	71.14	a.4.1.3	114626
1jfxA	217	76.05	c.1.8.8	62943
1b8oA	284	76.21	c.56.2.1	33762
2b2yA	187	77.06	b.34.13.2,b.34.13.2	127754,127755
1kbvA	327	80.07	b.6.1.3,b.6.1.3	68395,68396
1l1jA	239	80.55	b.47.1.1	84516
1pfbA	55	81.64	b.34.13.2	94655
1q3lA	69	81.83	b.34.13.2	111652
2evrA	246	83.26	b.34.11.3,d.3.1.16	132440,132441
2qjlA	99	85.61		
1b9eB	30	87.73	g.1.1.1	43885
1danU	121	89.12	b.1.2.1	21954