# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1krhA	338	6.255	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1gvhA	396	8.505	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1s96A	219	10.13	c.37.1.1	98740
1q3lA	69	11.85	b.34.13.2	111652
2qqrA	118	12.81		
1pfbA	55	13.11	b.34.13.2	94655
1gx5A	536	14.03	e.8.1.4	70682
1l5wA	796	16.39	c.87.1.4	73605
1v0aA	178	16.46	b.18.1.30	119815
2fmmA	74	20.13	b.34.13.2	133782
2rkqA	169	20.34		
1vk1A	242	20.65	d.268.1.2	108634
1q5yA	85	21.75	d.58.18.4	95950
1ohtA	215	22.23	d.118.1.1	87036
1twfB	1224	25.56	e.29.1.1	112726
2an9A	207	26.73	c.37.1.1	127037
2eaxA	164	29.31		
1em2A	229	31.59	d.129.3.2	41321
1xu1R	42	33.41	g.24.1.2	116036
1ok0A	74	35.00	b.5.1.1	93191
2hxwA	237	36.38		
2j5aA	110	37.39		
1vmaA	306	38.01	a.24.13.1,c.37.1.10	108887,108888
1v2xA	194	39.55	c.116.1.1	100274
1xmtA	103	42.35	d.108.1.1	115561
1vkcA	158	44.05	d.108.1.1	113663
1fdr	248	44.85		
1xcbA	211	44.95	a.4.5.38,c.2.1.12	109552,109553
2g39A	497	45.34	c.124.1.2,c.124.1.2	134553,134554
2bemA	170	46.95	b.1.18.2	116698
1qfjA	232	47.28	b.43.4.2,c.25.1.1	25655,31545
2evrA	246	47.33	b.34.11.3,d.3.1.16	132440,132441
1vqoA	240	50.34	b.34.5.3,b.40.4.5	120361,120362
1sqwA	188	52.67	b.122.1.1,d.17.6.3	119033,119034
2bsxA	253	53.49	c.56.2.1	129128
1ju2A	536	55.32	c.3.1.2,d.16.1.1	77169,77170
2gt1A	326	56.33		
1a8pA	258	59.69	b.43.4.2,c.25.1.1	25654,31544
2huhA	147	59.83		
2gpjA	252	61.45		
1m1fA	110	61.91	b.34.6.2	78401
1sk4A	163	63.59	d.118.1.1	105664
2hbwA	235	64.35		
2h8gA	267	65.10		
1gx3A	284	65.69	d.3.1.5	70678
3cz8A	319	65.92		
2oh1A	179	68.42		
2asuB	234	68.73		
1lshA	1056	69.35	a.118.4.1,f.7.1.1,f.7.1.1	74242,74243,74244
2opkA	112	70.74		
2ozvA	260	72.28		
1fdrA	248	72.32	b.43.4.2,c.25.1.1	25653,31543
3bs2A	148	73.05		
1b34A	119	74.17	b.38.1.1	24796
2dyqA	144	76.14		
1ypxA	375	76.80		
1fcyA	236	78.25	a.123.1.1	19282
2ok8A	316	82.78		
2eavA	165	82.95		
3cfuA	159	85.16		
1qqp2	218	85.23		
1am2A	199	86.19	b.86.1.2	28381
2bgiA	272	86.46		
2z2iA	191	86.71		
2c71A	216	86.83	c.6.2.3	130017
2j41A	207	88.50		
2a4vA	159	89.27	c.47.1.10	126163