# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s96A	219	7.273	c.37.1.1	98740
1gvhA	396	7.894	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2bemA	170	9.125	b.1.18.2	116698
2qqrA	118	9.640		
1krhA	338	11.70	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1v0aA	178	14.45	b.18.1.30	119815
1vk1A	242	15.38	d.268.1.2	108634
1gx5A	536	16.69	e.8.1.4	70682
1l5wA	796	17.36	c.87.1.4	73605
2an9A	207	18.58	c.37.1.1	127037
1ok0A	74	20.31	b.5.1.1	93191
1q3lA	69	24.91	b.34.13.2	111652
2fmmA	74	26.95	b.34.13.2	133782
1xu1R	42	26.96	g.24.1.2	116036
2hxwA	237	27.58		
1twfB	1224	30.87	e.29.1.1	112726
2j5aA	110	33.53		
1pfbA	55	33.62	b.34.13.2	94655
2eaxA	164	37.97		
1xcbA	211	39.95	a.4.5.38,c.2.1.12	109552,109553
3bs2A	148	42.33		
2g39A	497	42.37	c.124.1.2,c.124.1.2	134553,134554
1q5yA	85	42.46	d.58.18.4	95950
1zm8A	259	44.10		
2f69A	261	46.73	b.76.2.1,b.85.7.1	133035,133036
2evrA	246	47.84	b.34.11.3,d.3.1.16	132440,132441
1a8pA	258	48.72	b.43.4.2,c.25.1.1	25654,31544
1vmaA	306	50.48	a.24.13.1,c.37.1.10	108887,108888
2rkqA	169	51.44		
1aohA	147	53.04	b.2.2.2	22401
2hbwA	235	53.08		
2j41A	207	53.13		
1qfjA	232	54.30	b.43.4.2,c.25.1.1	25655,31545
2oh1A	179	56.58		
1fcyA	236	58.35	a.123.1.1	19282
1em2A	229	58.96	d.129.3.2	41321
1ju2A	536	63.58	c.3.1.2,d.16.1.1	77169,77170
1vkcA	158	63.81	d.108.1.1	113663
1vqoA	240	64.82	b.34.5.3,b.40.4.5	120361,120362
1ohtA	215	65.04	d.118.1.1	87036
2huhA	147	66.72		
2jg1A	330	67.83		
1n6aA	259	67.96	b.76.2.1,b.85.7.1	80121,80122
2bsxA	253	69.81	c.56.2.1	129128
1lshA	1056	71.16	a.118.4.1,f.7.1.1,f.7.1.1	74242,74243,74244
2z2iA	191	71.93		
1fjjA	159	72.29	b.17.1.2	59852
1fdr	248	74.71		
1am2A	199	76.91	b.86.1.2	28381
2oasA	436	78.34		
1t4bA	367	79.34	c.2.1.3,d.81.1.1	106406,106407
3bjeA	349	79.51		
2jdaA	145	79.76		
1gx3A	284	81.94	d.3.1.5	70678
1msoB	30	84.34	g.1.1.1	85092
2gfaA	119	84.70	b.34.9.1,b.34.9.1	135089,135090
2qdxA	257	85.71		
1sqwA	188	85.88	b.122.1.1,d.17.6.3	119033,119034
3cz8A	319	87.07		
2rdeA	251	88.01		
1m1fA	110	88.02	b.34.6.2	78401
1xmtA	103	89.71	d.108.1.1	115561