# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1q3lA 69 0.9132 b.34.13.2 111652 2evrA 246 2.129 b.34.11.3,d.3.1.16 132440,132441 1s96A 219 2.353 c.37.1.1 98740 2qqrA 118 2.459 2hbwA 235 3.227 2c71A 216 4.373 c.6.2.3 130017 2hc8A 113 4.792 1pfbA 55 5.021 b.34.13.2 94655 1em2A 229 5.198 d.129.3.2 41321 2g3rA 123 5.406 b.34.9.1,b.34.9.1 134570,134571 1am2A 199 5.628 b.86.1.2 28381 1xu1R 42 6.028 g.24.1.2 116036 1ok0A 74 8.131 b.5.1.1 93191 1l5wA 796 8.820 c.87.1.4 73605 2jm1A 141 9.947 1gvhA 396 10.36 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2j5aA 110 10.87 2an9A 207 10.89 c.37.1.1 127037 1msoB 30 11.00 g.1.1.1 85092 1fjjA 159 11.00 b.17.1.2 59852 1fdr 248 11.29 2ee1A 64 12.19 2opkA 112 12.91 2ojwA 384 12.94 2psoA 237 13.45 2gfaA 119 14.13 b.34.9.1,b.34.9.1 135089,135090 2bsxA 253 14.85 c.56.2.1 129128 3d1cA 369 14.95 2rdeA 251 15.10 1ep3B 262 15.38 b.43.4.2,c.25.1.3 25664,31554 1v0aA 178 15.43 b.18.1.30 119815 2bjrA 368 15.64 b.169.1.1,b.169.1.1 128628,128629 1gx5A 536 15.81 e.8.1.4 70682 2bemA 170 15.83 b.1.18.2 116698 2jg0A 535 16.82 2h8gA 267 17.11 2hd9A 145 17.73 3bodA 178 17.98 1at0A 145 18.10 b.86.1.1 28374 1ae9A 179 18.43 d.163.1.1 42153 1at0 145 19.92 1a8pA 258 20.72 b.43.4.2,c.25.1.1 25654,31544 2qjlA 99 20.74 2f3nA 76 20.86 a.60.1.2 132885 3c2qA 345 21.03 2ok8A 316 21.04 1sesA 421 21.26 a.2.7.1,d.104.1.1 15710,40710 1xmtA 103 21.54 d.108.1.1 115561 1xcbA 211 21.57 a.4.5.38,c.2.1.12 109552,109553 1c4rA 182 22.22 b.29.1.4 24229 1xniA 118 22.27 b.34.9.1,b.34.9.1 115582,115583 1uscA 178 22.91 b.45.1.2 99860 1nofA 383 24.01 b.71.1.2,c.1.8.3 92020,92021 2p3yA 491 24.07 1fdrA 248 24.18 b.43.4.2,c.25.1.1 25653,31543 2gt1A 326 24.29 2eveA 157 24.46 b.122.1.8 132427 2hl5C 97 24.54 2nwfA 141 25.88 3bjeA 349 26.04 1nlnA 204 26.31 d.3.1.7 91962 2fmmA 74 26.88 b.34.13.2 133782 2a28A 54 26.97 3bs2A 148 27.57 1z85A 234 28.08 1qcsA 211 28.18 b.52.2.3,d.31.1.1 26927,38461 2nzhA 113 29.34 1wleA 501 30.27 2qjoA 341 30.73 1k0wA 231 31.08 c.74.1.1 77220 1vqoK 132 31.89 b.39.1.1 120372 2e5yA 133 32.82 2c6qA 351 32.98 1tcvA 287 33.11 1vqoA 240 34.11 b.34.5.3,b.40.4.5 120361,120362 2glwA 92 34.58 2bkdN 134 34.70 2qdxA 257 34.87 1krhA 338 36.02 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1mhnA 59 36.06 b.34.9.1 84964 1fuxA 166 36.40 b.17.1.2 60034 1fuiA 591 37.15 b.43.2.1,c.85.1.1 25674,35444 2yyoA 171 38.74 1twfB 1224 40.73 e.29.1.1 112726 2egvA 229 41.59 1vhyA 257 42.48 b.122.1.2,c.116.1.5 100714,100715 1k5nB 100 42.60 b.1.1.2 77268 1ju2A 536 42.96 c.3.1.2,d.16.1.1 77169,77170 2c5uA 375 43.59 2j41A 207 44.25 1ryaA 160 44.98 d.113.1.5 105122 2f4qA 346 45.11 2jg1A 330 46.17 2bgiA 272 46.29 1qe5A 266 46.95 c.56.2.1 33784 2as9A 210 47.77 1zc1A 208 47.81 2bneA 241 48.48 c.73.1.3 128824 2qe7H 135 49.34 1f42A 306 49.58 b.1.1.4,b.1.2.1,b.1.2.1 59636,59637,59638 2grcA 129 50.77 2f60K 64 50.85 2gz4A 207 51.74 1qxyA 252 51.85 d.127.1.1 96565 2p2sA 336 52.38 1q5yA 85 52.84 d.58.18.4 95950 2b2yA 187 53.21 b.34.13.2,b.34.13.2 127754,127755 1wgsA 133 53.92 b.34.13.3 114622 3c5tA 122 54.10 1yqvL 211 55.58 b.1.1.1,b.1.1.2 123900,123901 2qf3A 243 55.74 1b8oA 284 55.74 c.56.2.1 33762 1u8xX 472 57.69 c.2.1.5,d.162.1.2 107741,107742 3bb7A 321 57.79 1g2oA 268 58.49 c.56.2.1 60228 2r55A 231 58.58 2iqgA 406 59.84 b.50.1.2 137588 2eixA 243 60.03 2vqeQ 105 62.33 2pkpA 170 62.43 2dyqA 144 63.17 2yxdA 183 63.54 1lcyA 325 67.95 b.36.1.4,b.47.1.1 73834,73835 1m1fA 110 68.18 b.34.6.2 78401 2dqsA 995 68.26 2imlA 199 68.51 2f69A 261 68.92 b.76.2.1,b.85.7.1 133035,133036 1jysA 242 69.01 c.56.2.1 77216 1ybdA 239 69.95 c.73.1.3 122884 2gw4B 162 70.10 1gppA 237 70.43 b.86.1.2 76262 3cihA 739 70.73 2jw5A 106 70.75 1o75A 415 72.14 b.1.20.1,b.1.20.1,b.120.1.1 81117,81118,81119 2z1cA 75 72.44 2ey4C 82 72.71 b.43.3.5 132582 1wvfA 520 72.96 d.58.32.1,d.145.1.1 121337,121338 2bzeA 153 73.32 2oq0A 206 73.43 1yn8A 59 74.16 1tovA 98 75.29 b.34.10.1 107179 2pofA 227 75.94 2f23A 156 77.23 a.2.1.1,d.26.1.2 132797,132798 1v2xA 194 77.27 c.116.1.1 100274 3cfuA 159 77.66 1wpgA 994 77.84 b.82.7.1,c.108.1.7,d.220.1.1,f.33.1.1 114806,114807,114808,114809 1sqwA 188 78.53 b.122.1.1,d.17.6.3 119033,119034 1yg9A 330 79.41 2fpeA 62 79.43 1zosA 230 79.71 2ivwA 113 79.81 2nw5A 360 80.58 2r6hA 290 81.30 1k9vF 201 83.57 c.23.16.1 68365 2eulA 156 83.67 a.2.1.1,d.26.1.2 132392,132393 1tg0A 68 83.96 1je0A 236 84.09 c.56.2.1 66581 1r4pB 70 84.25 b.40.2.1 97026 1zwtA 158 86.86 1zuyA 58 87.60 3c5iA 369 89.61