# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	9.923	d.129.3.2	41321
1s96A	219	12.17	c.37.1.1	98740
2hxwA	237	12.78		
1gx5A	536	14.81	e.8.1.4	70682
1vk1A	242	15.44	d.268.1.2	108634
1q3lA	69	17.34	b.34.13.2	111652
2rkqA	169	20.28		
1pfbA	55	23.46	b.34.13.2	94655
1xmtA	103	24.77	d.108.1.1	115561
1ok0A	74	26.34	b.5.1.1	93191
1xu1R	42	26.92	g.24.1.2	116036
1gvhA	396	27.49	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1l5wA	796	27.50	c.87.1.4	73605
2an9A	207	28.61	c.37.1.1	127037
2asuB	234	31.91		
1qfjA	232	31.92	b.43.4.2,c.25.1.1	25655,31545
3bjeA	349	31.92		
1vmaA	306	33.89	a.24.13.1,c.37.1.10	108887,108888
2qqrA	118	35.84		
2huhA	147	40.61		
2a4vA	159	42.11	c.47.1.10	126163
1krhA	338	43.12	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1q5yA	85	45.31	d.58.18.4	95950
1qqp2	218	47.33		
2jdaA	145	49.45		
2evrA	246	49.70	b.34.11.3,d.3.1.16	132440,132441
1vkcA	158	50.26	d.108.1.1	113663
1v0aA	178	50.55	b.18.1.30	119815
1lshA	1056	51.32	a.118.4.1,f.7.1.1,f.7.1.1	74242,74243,74244
2bemA	170	51.69	b.1.18.2	116698
2fmmA	74	52.42	b.34.13.2	133782
2c71A	216	54.05	c.6.2.3	130017
2j5aA	110	55.37		
1m1fA	110	55.98	b.34.6.2	78401
2opkA	112	59.71		
2f3nA	76	60.52	a.60.1.2	132885
1sqwA	188	64.39	b.122.1.1,d.17.6.3	119033,119034
2jg1A	330	66.91		
3bs2A	148	67.18		
2ojwA	384	67.94		
1ju2A	536	70.29	c.3.1.2,d.16.1.1	77169,77170
2eaxA	164	70.96		
1twfB	1224	72.54	e.29.1.1	112726
2dyqA	144	73.50		
1fcyA	236	73.57	a.123.1.1	19282
1ohtA	215	77.81	d.118.1.1	87036
2gt1A	326	78.50		
2jm1A	141	78.84		
1vqoA	240	79.94	b.34.5.3,b.40.4.5	120361,120362
1gx3A	284	83.74	d.3.1.5	70678
2bjrA	368	85.58	b.169.1.1,b.169.1.1	128628,128629
2hbwA	235	86.60		
2e3nA	255	86.74