# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s96A	219	8.474	c.37.1.1	98740
1gx5A	536	10.00	e.8.1.4	70682
1q5yA	85	14.42	d.58.18.4	95950
3bjeA	349	17.20		
2rkqA	169	17.98		
2hxwA	237	18.21		
1gvhA	396	18.81	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1vk1A	242	18.94	d.268.1.2	108634
1em2A	229	21.15	d.129.3.2	41321
1q3lA	69	21.37	b.34.13.2	111652
2an9A	207	22.80	c.37.1.1	127037
1vmaA	306	25.13	a.24.13.1,c.37.1.10	108887,108888
1pfbA	55	28.64	b.34.13.2	94655
1xu1R	42	30.32	g.24.1.2	116036
1l5wA	796	32.51	c.87.1.4	73605
2qqrA	118	35.94		
1krhA	338	36.36	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1qfjA	232	37.74	b.43.4.2,c.25.1.1	25655,31545
2a4vA	159	37.85	c.47.1.10	126163
1v0aA	178	39.02	b.18.1.30	119815
2huhA	147	40.77		
2fmmA	74	42.42	b.34.13.2	133782
2bemA	170	45.09	b.1.18.2	116698
1m1fA	110	51.37	b.34.6.2	78401
1ok0A	74	53.21	b.5.1.1	93191
2asuB	234	54.14		
2gt1A	326	54.46		
2dgmA	466	62.02	c.67.1.6	131508
2j5aA	110	62.36		
3bs2A	148	62.52		
1xmtA	103	63.85	d.108.1.1	115561
2g39A	497	64.86	c.124.1.2,c.124.1.2	134553,134554
1twfB	1224	65.97	e.29.1.1	112726
1xcbA	211	67.54	a.4.5.38,c.2.1.12	109552,109553
1sgwA	214	69.78	c.37.1.12	105541
2opkA	112	70.55		
2f3nA	76	71.44	a.60.1.2	132885
2evrA	246	71.54	b.34.11.3,d.3.1.16	132440,132441
1gx3A	284	72.53	d.3.1.5	70678
2dyqA	144	75.17		
1vkcA	158	75.51	d.108.1.1	113663
2oh1A	179	75.67		
1ctqA	166	76.99	c.37.1.8	31965
1pmmA	466	77.50	c.67.1.6	94901
2c71A	216	79.90	c.6.2.3	130017
1v2xA	194	81.01	c.116.1.1	100274
2eaxA	164	81.41		
1fcyA	236	81.92	a.123.1.1	19282
3cz8A	319	83.44		
1fuiA	591	83.64	b.43.2.1,c.85.1.1	25674,35444
2z2iA	191	84.20		
1sqwA	188	84.42	b.122.1.1,d.17.6.3	119033,119034
2dgkA	452	85.96		
1vqoA	240	87.80	b.34.5.3,b.40.4.5	120361,120362