# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	9.427	d.129.3.2	41321
1gx5A	536	16.55	e.8.1.4	70682
1s96A	219	17.67	c.37.1.1	98740
2rkqA	169	17.87		
2hxwA	237	18.36		
3bjeA	349	18.83		
1q3lA	69	24.50	b.34.13.2	111652
1vk1A	242	25.98	d.268.1.2	108634
1q5yA	85	26.24	d.58.18.4	95950
1l5wA	796	26.38	c.87.1.4	73605
1xu1R	42	29.37	g.24.1.2	116036
1pfbA	55	30.36	b.34.13.2	94655
2qqrA	118	31.61		
2asuB	234	31.82		
2a4vA	159	33.23	c.47.1.10	126163
1gvhA	396	34.86	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1m1fA	110	37.87	b.34.6.2	78401
1ok0A	74	40.75	b.5.1.1	93191
1qfjA	232	42.81	b.43.4.2,c.25.1.1	25655,31545
2bemA	170	42.85	b.1.18.2	116698
2an9A	207	42.85	c.37.1.1	127037
2fmmA	74	43.75	b.34.13.2	133782
1vkcA	158	44.60	d.108.1.1	113663
1vmaA	306	46.02	a.24.13.1,c.37.1.10	108887,108888
1xmtA	103	46.10	d.108.1.1	115561
1lshA	1056	49.68	a.118.4.1,f.7.1.1,f.7.1.1	74242,74243,74244
1krhA	338	53.64	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1qqp2	218	55.35		
2j5aA	110	55.53		
1v0aA	178	56.30	b.18.1.30	119815
2huhA	147	59.06		
1fcyA	236	60.19	a.123.1.1	19282
1fo0A	116	60.38	b.1.1.1	20610
1ju2A	536	61.96	c.3.1.2,d.16.1.1	77169,77170
3bs2A	148	63.52		
2jdaA	145	64.15		
1twfB	1224	65.86	e.29.1.1	112726
2f3nA	76	66.08	a.60.1.2	132885
1vqoA	240	68.25	b.34.5.3,b.40.4.5	120361,120362
2evrA	246	70.03	b.34.11.3,d.3.1.16	132440,132441
2c71A	216	70.65	c.6.2.3	130017
2jm1A	141	71.82		
1vp2A	208	75.24	c.51.4.1	113933
2opkA	112	75.25		
1ohtA	215	76.85	d.118.1.1	87036
2eaxA	164	76.93		
1ohpA	125	77.09	d.17.4.3	118702
1gx3A	284	77.09	d.3.1.5	70678
1sqwA	188	78.39	b.122.1.1,d.17.6.3	119033,119034
2dyqA	144	83.65		
2jg1A	330	84.86		
1zm8A	259	88.24		
2gt1A	326	89.87