# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s96A	219	5.107	c.37.1.1	98740
1q3lA	69	10.10	b.34.13.2	111652
2hxwA	237	10.33		
1gvhA	396	10.51	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
1em2A	229	10.94	d.129.3.2	41321
1vk1A	242	11.16	d.268.1.2	108634
1l5wA	796	12.20	c.87.1.4	73605
2an9A	207	12.49	c.37.1.1	127037
1gx5A	536	12.53	e.8.1.4	70682
2j5aA	110	16.05		
2rkqA	169	16.14		
1ohtA	215	18.43	d.118.1.1	87036
1pfbA	55	18.56	b.34.13.2	94655
2eaxA	164	18.67		
1krhA	338	18.83	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
2qqrA	118	25.67		
1ok0A	74	28.57	b.5.1.1	93191
1xu1R	42	29.03	g.24.1.2	116036
3bjeA	349	30.21		
2opkA	112	31.32		
1qqp2	218	33.50		
1sqwA	188	35.09	b.122.1.1,d.17.6.3	119033,119034
1twfB	1224	36.31	e.29.1.1	112726
2fmmA	74	37.24	b.34.13.2	133782
1xmtA	103	38.68	d.108.1.1	115561
2bemA	170	38.74	b.1.18.2	116698
2bsxA	253	39.66	c.56.2.1	129128
2asuB	234	40.10		
2c71A	216	42.20	c.6.2.3	130017
2h8gA	267	42.66		
2evrA	246	45.80	b.34.11.3,d.3.1.16	132440,132441
1vmaA	306	48.20	a.24.13.1,c.37.1.10	108887,108888
2huhA	147	48.52		
1q5yA	85	50.07	d.58.18.4	95950
1v0aA	178	50.37	b.18.1.30	119815
1ju2A	536	50.54	c.3.1.2,d.16.1.1	77169,77170
2dyqA	144	51.51		
2hbwA	235	55.38		
3bs2A	148	59.65		
2f3nA	76	60.46	a.60.1.2	132885
1fdr	248	61.82		
2c2uA	207	63.93		
1tcvA	287	64.51		
1qfjA	232	65.60	b.43.4.2,c.25.1.1	25655,31545
1cqmA	101	67.60	d.58.14.1	39321
1zm8A	259	68.42		
2jdaA	145	70.55		
2q16A	219	72.04		
2gecA	139	72.06	b.148.1.1	135059
1fjjA	159	74.74	b.17.1.2	59852
1xmzA	241	75.27		
1am2A	199	76.19	b.86.1.2	28381
2jg1A	330	77.65		
1u8xX	472	77.71	c.2.1.5,d.162.1.2	107741,107742
1uyrA	737	78.29	c.14.1.4,c.14.1.4	100188,100189
1vkcA	158	78.46	d.108.1.1	113663
2hc8A	113	78.59		
1m1fA	110	80.15	b.34.6.2	78401
2bgiA	272	82.70		
1v2xA	194	83.15	c.116.1.1	100274
1a8pA	258	83.80	b.43.4.2,c.25.1.1	25654,31544
2eavA	165	84.33		
2gt1A	326	84.49		
1accA	735	86.62	f.11.1.1	43828
2vhsA	217	89.09