# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s96A	219	9.559	c.37.1.1	98740
1gx5A	536	10.92	e.8.1.4	70682
1em2A	229	17.68	d.129.3.2	41321
1vk1A	242	19.17	d.268.1.2	108634
1q5yA	85	20.53	d.58.18.4	95950
2an9A	207	20.90	c.37.1.1	127037
3bjeA	349	21.21		
2rkqA	169	24.19		
2bemA	170	24.99	b.1.18.2	116698
1xu1R	42	26.31	g.24.1.2	116036
1l5wA	796	27.19	c.87.1.4	73605
3bs2A	148	27.32		
2qqrA	118	29.29		
2hxwA	237	30.15		
1v0aA	178	31.95	b.18.1.30	119815
1ok0A	74	33.25	b.5.1.1	93191
1gvhA	396	34.04	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2eaxA	164	35.44		
1xcbA	211	38.76	a.4.5.38,c.2.1.12	109552,109553
1twfB	1224	40.76	e.29.1.1	112726
1m1fA	110	40.93	b.34.6.2	78401
1ju2A	536	41.88	c.3.1.2,d.16.1.1	77169,77170
1qqp2	218	41.97		
1fo0A	116	43.46	b.1.1.1	20610
2f3nA	76	43.68	a.60.1.2	132885
2asuB	234	46.16		
2c71A	216	46.46	c.6.2.3	130017
3d1cA	369	48.48		
1vmaA	306	48.83	a.24.13.1,c.37.1.10	108887,108888
2fmmA	74	49.60	b.34.13.2	133782
2j5aA	110	51.48		
1q3lA	69	51.91	b.34.13.2	111652
1vqoA	240	51.94	b.34.5.3,b.40.4.5	120361,120362
2jdaA	145	52.85		
1ohtA	215	56.33	d.118.1.1	87036
2dyqA	144	57.08		
1v2xA	194	58.04	c.116.1.1	100274
1krhA	338	59.91	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1sqwA	188	64.23	b.122.1.1,d.17.6.3	119033,119034
1vkcA	158	67.08	d.108.1.1	113663
1qfjA	232	67.81	b.43.4.2,c.25.1.1	25655,31545
1fcyA	236	71.08	a.123.1.1	19282
2a4vA	159	71.81	c.47.1.10	126163
2eavA	165	78.31		
2jg1A	330	80.58		
1rewC	135	83.48	g.7.1.3	97336
1pfbA	55	84.23	b.34.13.2	94655
1xmzA	241	88.11		
2jm1A	141	89.27