# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s96A	219	6.690	c.37.1.1	98740
1gvhA	396	12.71	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
2hxwA	237	13.98		
1em2A	229	14.33	d.129.3.2	41321
1xu1R	42	15.56	g.24.1.2	116036
2f3nA	76	18.29	a.60.1.2	132885
1vkcA	158	20.22	d.108.1.1	113663
2qqrA	118	20.79		
2an9A	207	20.95	c.37.1.1	127037
1q3lA	69	24.11	b.34.13.2	111652
1pfbA	55	24.21	b.34.13.2	94655
2j5aA	110	25.36		
2evrA	246	26.88	b.34.11.3,d.3.1.16	132440,132441
2ojwA	384	28.22		
1l5wA	796	28.51	c.87.1.4	73605
1gx5A	536	30.56	e.8.1.4	70682
2c71A	216	31.62	c.6.2.3	130017
3bjeA	349	31.69		
1ok0A	74	32.67	b.5.1.1	93191
2bemA	170	34.15	b.1.18.2	116698
1ju2A	536	35.86	c.3.1.2,d.16.1.1	77169,77170
1fcyA	236	36.99	a.123.1.1	19282
2opkA	112	42.65		
2bsxA	253	43.42	c.56.2.1	129128
2hbwA	235	47.02		
1vk1A	242	51.26	d.268.1.2	108634
1uscA	178	56.95	b.45.1.2	99860
2fmmA	74	57.22	b.34.13.2	133782
1fjjA	159	59.27	b.17.1.2	59852
2cr4A	126	64.77		
2gfaA	119	65.29	b.34.9.1,b.34.9.1	135089,135090
1v0aA	178	65.91	b.18.1.30	119815
1vqoA	240	66.79	b.34.5.3,b.40.4.5	120361,120362
2jm1A	141	69.11		
1ohtA	215	70.74	d.118.1.1	87036
1msoB	30	74.77	g.1.1.1	85092
2cb5A	453	75.85	d.3.1.1	37035
1q5yA	85	76.75	d.58.18.4	95950
2q16A	219	77.57		
1sesA	421	77.74	a.2.7.1,d.104.1.1	15710,40710
1qgvA	142	79.08	c.47.1.8	33056
1v2xA	194	80.15	c.116.1.1	100274
2eaxA	164	81.16		
2gt1A	326	81.97		
3bs2A	148	82.85		
1xmtA	103	84.48	d.108.1.1	115561
2qjlA	99	85.26		
2f69A	261	85.78	b.76.2.1,b.85.7.1	133035,133036
2jg1A	330	85.96		
2a4vA	159	88.60	c.47.1.10	126163
2j41A	207	88.80		
1f42A	306	89.14	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
1krhA	338	89.25	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893