# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1em2A	229	4.254	d.129.3.2	41321
1s96A	219	5.504	c.37.1.1	98740
1gx5A	536	13.23	e.8.1.4	70682
1v0aA	178	13.26	b.18.1.30	119815
1vkcA	158	13.73	d.108.1.1	113663
1l5wA	796	14.01	c.87.1.4	73605
2an9A	207	16.25	c.37.1.1	127037
1xu1R	42	16.28	g.24.1.2	116036
3bs2A	148	19.69		
1q3lA	69	20.01	b.34.13.2	111652
2c71A	216	20.19	c.6.2.3	130017
1vk1A	242	20.38	d.268.1.2	108634
2qqrA	118	21.95		
1pfbA	55	21.97	b.34.13.2	94655
2hxwA	237	23.37		
1twfB	1224	24.10	e.29.1.1	112726
1ok0A	74	29.74	b.5.1.1	93191
1ju2A	536	30.09	c.3.1.2,d.16.1.1	77169,77170
1gvhA	396	30.21	a.1.1.2,b.43.4.2,c.25.1.5	70601,70602,70603
3bjeA	349	33.50		
2jg1A	330	40.45		
2j5aA	110	41.34		
2opkA	112	41.59		
1lshA	1056	42.64	a.118.4.1,f.7.1.1,f.7.1.1	74242,74243,74244
2j41A	207	44.48		
1vqoA	240	44.64	b.34.5.3,b.40.4.5	120361,120362
2bemA	170	44.82	b.1.18.2	116698
2bsxA	253	44.87	c.56.2.1	129128
1q5yA	85	46.64	d.58.18.4	95950
2evrA	246	47.33	b.34.11.3,d.3.1.16	132440,132441
2fmmA	74	49.18	b.34.13.2	133782
1gx3A	284	50.18	d.3.1.5	70678
2jm1A	141	50.80		
2ojwA	384	51.09		
2asuB	234	52.07		
2jdaA	145	52.19		
2f3nA	76	52.66	a.60.1.2	132885
1krhA	338	52.76	b.43.4.2,c.25.1.2,d.15.4.2	72891,72892,72893
1m1fA	110	53.32	b.34.6.2	78401
1fcyA	236	53.51	a.123.1.1	19282
2dh2A	424	54.26		
2oh5A	248	54.74		
1fo0A	116	54.80	b.1.1.1	20610
2huhA	147	58.77		
1qqp2	218	63.22		
2h8gA	267	65.59		
1tcvA	287	68.78		
1nlnA	204	71.28	d.3.1.7	91962
1sqwA	188	71.67	b.122.1.1,d.17.6.3	119033,119034
2a4vA	159	72.92	c.47.1.10	126163
1kthA	58	73.50	g.8.1.1	68863
1am2A	199	75.34	b.86.1.2	28381
2hbwA	235	75.70		
2cb5A	453	76.01	d.3.1.1	37035
1fuiA	591	76.13	b.43.2.1,c.85.1.1	25674,35444
2gt1A	326	78.57		
1fjjA	159	78.95	b.17.1.2	59852
1b34A	119	83.79	b.38.1.1	24796
2bkdN	134	86.08		
2rkqA	169	86.39		
1zm8A	259	87.92		
1qfjA	232	89.39	b.43.4.2,c.25.1.1	25655,31545
2c2uA	207	89.81		
3d1cA	369	89.88