# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1fd9A 213 2.652 d.26.1.1 59771 1jvwA 167 5.163 d.26.1.1 71907 1kzlA 208 5.167 b.43.4.3,b.43.4.3 77635,77636 1sawA 225 6.047 d.177.1.1 112050 1nkqA 259 6.248 d.177.1.1 103862 2f4eA 180 7.664 2oqkA 117 7.826 1wfyA 104 8.527 d.15.1.5 114597 2ckkA 127 8.527 1q6uA 245 11.87 d.26.1.1 95998 2fhdA 153 15.02 1wzoA 246 15.23 1gd7A 109 18.25 b.40.4.4 60441 1yvcA 70 18.64 b.40.4.12 124094 1h9mA 145 19.37 b.40.6.2,b.40.6.2 60833,60834 2cwpA 112 22.26 2i46A 161 23.21 1r9fA 136 24.00 d.255.1.1 97257 2pfuA 99 24.45 2bemA 170 25.29 b.1.18.2 116698 1q6hA 224 27.33 d.26.1.1 95975 1yqbA 100 28.17 d.15.1.1 123876 1vhyA 257 28.28 b.122.1.2,c.116.1.5 100714,100715 1bb9A 115 29.56 b.34.2.1 24554 1bdoA 80 31.09 b.84.1.1 28214 1a34A 159 33.12 b.121.7.1 23286 1bdo 80 33.26 1xw3A 110 35.07 2qx2A 344 35.38 2r39A 118 36.19 2eveA 157 37.02 b.122.1.8 132427 1q46A 175 38.88 a.60.14.1,b.40.4.5 111594,111595 1hh2P 344 39.43 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 2g50A 530 39.97 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 1ddlA 188 40.32 b.121.4.6 23317 1at0 145 40.36 1y0bA 197 40.70 c.61.1.1 122476 1at0A 145 40.75 b.86.1.1 28374 2pbcA 102 41.95 2g6tA 306 42.85 c.147.1.1 134717 1r9hA 135 43.73 d.26.1.1 97260 2pn8A 211 43.88 2ho9A 167 44.76 1l3aA 228 44.93 d.18.1.2 73531 2hc8A 113 45.35 3b9tA 484 46.22 2vgiA 528 46.76 1ahsA 126 49.63 b.19.1.1 23794 2a28A 54 51.85 2g3rA 123 52.06 b.34.9.1,b.34.9.1 134570,134571 1g31A 111 52.70 b.35.1.1 24656 2z1cA 75 53.04 2sga 181 53.62 2e5iA 124 55.09 3bneA 839 55.93 1i8dA 213 55.97 b.43.4.3,b.43.4.3 61953,61954 1hyoA 421 56.18 b.34.8.1,d.177.1.1 59001,59002 2nptA 106 56.37 d.15.2.2 138448 2bswA 146 60.86 d.108.1.1 129127 1bkf 107 60.90 2hqxA 246 62.41 b.34.9.1 136675 2o88A 58 63.05 1d7qA 143 64.02 b.40.4.5 25331 2gjgA 248 64.45 2q18X 293 65.63 1ugpB 226 65.71 b.34.4.4 107832 1bb9 115 66.25 2pth 193 67.08 1bcoA 327 68.21 b.48.1.1,c.55.3.3 26431,33676 2q2iA 116 68.28 1ul7A 102 68.63 d.129.6.1 99540 2ggrA 76 69.16 2yyoA 171 71.97 1a0nB 69 72.88 b.34.2.1 24469 1u79A 129 73.00 d.26.1.1 107714 2j8bA 79 74.20 2fcoA 200 74.28 2drmA 58 75.76 2cy9A 140 76.52 d.38.1.5 131019 1zuuA 58 77.49 b.34.2.1 125688 1pfbA 55 78.92 b.34.13.2 94655 2cvbA 188 79.01 c.47.1.10 130859 2iu4A 336 79.15 2qpwA 149 79.50 1bco 327 79.56 2awgA 118 79.60 2z0tA 109 79.84 1jhfA 202 81.25 a.4.5.2,b.87.1.1 63057,63058 1bkfA 107 82.02 d.26.1.1 38382 2qqrA 118 82.33 1utiA 58 83.00 b.34.2.1 99962 2bkdN 134 83.65 1go3E 187 83.92 b.40.4.5,d.230.1.1 83054,83055 1fl0A 171 84.31 b.40.4.4 25315 2qlcA 126 84.89 1s3eA 520 84.98 c.3.1.2,d.16.1.5 98426,98427 2ouaA 188 85.54 1p4oA 322 87.03 d.144.1.7 87775 2raaA 204 87.94 2e8gA 241 88.11 1zuyA 58 88.48 1vqoA 240 89.02 b.34.5.3,b.40.4.5 120361,120362